Identification of a rapid mammalian deadenylation-dependent decay pathway and its inhibition by a viral RNA element

Mol Cell. 2006 Dec 28;24(6):943-53. doi: 10.1016/j.molcel.2006.10.029.

Abstract

Cellular RNAs are subject to quality-control pathways that insure the fidelity of gene expression. We previously identified a 79 nt element, the ENE, that is essential for the nuclear accumulation of a viral polyadenylated nuclear (PAN) RNA. Here, we show that intron-less polyadenylated transcripts such as PAN RNA and beta-globin cRNA exhibit two-component exponential decay kinetics in which some transcripts are rapidly degraded (t(1/2) = approximately 15 min) while others decay more slowly (t(1/2) = approximately 3 hr). Inclusion of the ENE protects such transcripts from rapid decay in a poly(A)-dependent fashion. The ENE inhibits deadenylation and decay in nuclear extract and prevents deadenylation of naked RNA by a purified deadenylase, likely through snoRNA-like intramolecular hybridization with the poly(A) tail. The ENE causes increased accumulation of splicing-defective beta-globin pre-mRNAs in vivo. We propose that the ENE-controlled rapid-decay mechanism for polyadenylated transcripts comprises a nuclear pre-mRNA surveillance system in mammalian cells.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Elements*
  • Globins / genetics
  • Humans
  • Molecular Sequence Data
  • Mutation
  • Polyadenylation
  • RNA Splice Sites
  • RNA Stability*
  • RNA, Messenger / genetics*
  • RNA, Viral / metabolism*
  • Signal Transduction
  • Transcription, Genetic

Substances

  • Elements
  • RNA Splice Sites
  • RNA, Messenger
  • RNA, Viral
  • Globins