Selection in vitro of allosteric ribozymes

Methods Mol Biol. 2004:252:145-64. doi: 10.1385/1-59259-746-7:145.

Abstract

The capacities of RNA for both catalysis and molecular recognition have been appreciated for some time. Recently, a number of studies have shown that these distinct functional classes may be combined to generate multipartite ribozymes in which the catalytic and ligand-binding elements act coordinately. In this chapter, we describe a procedure known as allosteric selection, in which an RNA catalyst in conjunction with a random sequence domain is subjected to iterative in vitro selection in order selectively to recover ligand-dependent ribozymes.

MeSH terms

  • Allosteric Regulation
  • Base Sequence
  • DNA Primers
  • Genetic Engineering / methods
  • Indicators and Reagents
  • Kinetics
  • Nucleic Acid Conformation
  • RNA, Catalytic / chemistry*
  • RNA, Catalytic / metabolism*
  • Reverse Transcriptase Polymerase Chain Reaction / methods

Substances

  • DNA Primers
  • Indicators and Reagents
  • RNA, Catalytic