A novel embryonic poly(A) binding protein, ePAB, regulates mRNA deadenylation in Xenopus egg extracts

Genes Dev. 2001 Mar 15;15(6):774-88. doi: 10.1101/gad.872201.

Abstract

An in vitro system that recapitulates the in vivo effect of AU-rich elements (AREs) on mRNA deadenylation has been developed from Xenopus activated egg extracts. ARE-mediated deadenylation is uncoupled from mRNA body decay, and the rate of deadenylation increases with the number of tandem AUUUAs. A novel ARE-binding protein called ePAB (for embryonic poly(A)-binding protein) has been purified from this extract by ARE affinity selection. ePAB exhibits 72% identity to mammalian and Xenopus PABP1 and is the predominant poly(A)-binding protein expressed in the stage VI oocyte and during Xenopus early development. Immunodepletion of ePAB increases the rate of both ARE-mediated and default deadenylation in vitro. In contrast, addition of even a small excess of ePAB inhibits deadenylation, demonstrating that the ePAB concentration is critical for determining the rate of ARE-mediated deadenylation. These data argue that ePAB is the poly(A)-binding protein responsible for stabilization of poly(A) tails and is thus a potential regulator of mRNA deadenylation and translation during early development.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Adenosine Monophosphate / metabolism
  • Amino Acid Sequence
  • Animals
  • Base Sequence
  • Blotting, Western
  • DNA Methylation
  • Gene Expression Regulation, Developmental
  • Kinetics
  • Molecular Sequence Data
  • Oocytes / metabolism
  • Plasmids / metabolism
  • Poly A / metabolism*
  • Poly(A)-Binding Proteins
  • Precipitin Tests
  • Protein Binding
  • RNA-Binding Proteins / genetics*
  • RNA-Binding Proteins / metabolism
  • RNA-Binding Proteins / physiology*
  • Recombinant Proteins / metabolism
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid
  • Time Factors
  • Transcriptional Activation
  • Ultraviolet Rays
  • Xenopus / genetics*
  • Xenopus Proteins*

Substances

  • PABPC4 protein, Xenopus
  • Poly(A)-Binding Proteins
  • RNA-Binding Proteins
  • Recombinant Proteins
  • Xenopus Proteins
  • Poly A
  • Adenosine Monophosphate

Associated data

  • GENBANK/AF338225