Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides

Steven D Brown; Sagar M Utturkar; Dawn M Klingeman; Courtney M Johnson; Stanton L Martin; Miriam L Land; Tse-Yuan S Lu; Christopher W Schadt; Mitchel J Doktycz; Dale A Pelletier

doi:10.1128/JB.01243-12

Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides

J Bacteriol. 2012 Nov;194(21):5991-3. doi: 10.1128/JB.01243-12.

Authors

Steven D Brown¹, Sagar M Utturkar, Dawn M Klingeman, Courtney M Johnson, Stanton L Martin, Miriam L Land, Tse-Yuan S Lu, Christopher W Schadt, Mitchel J Doktycz, Dale A Pelletier

Affiliation

¹ Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA. brownsd@ornl.gov

Abstract

To aid in the investigation of the Populus deltoides microbiome, we generated draft genome sequences for 21 Pseudomonas strains and 19 other diverse bacteria isolated from Populus deltoides roots. Genome sequences for isolates similar to Acidovorax, Bradyrhizobium, Brevibacillus, Caulobacter, Chryseobacterium, Flavobacterium, Herbaspirillum, Novosphingobium, Pantoea, Phyllobacterium, Polaromonas, Rhizobium, Sphingobium, and Variovorax were generated.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

Bacteria / genetics*
Bacteria / isolation & purification
DNA, Bacterial / chemistry*
DNA, Bacterial / genetics*
Endophytes / genetics
Endophytes / isolation & purification
Genome, Bacterial*
Metagenome
Molecular Sequence Data
Plant Roots / microbiology
Populus / microbiology
Rhizosphere
Sequence Analysis, DNA*
Soil Microbiology

Substances

DNA, Bacterial