Transmission disequilibrium analysis of a triplet repeat within the hKCa3 gene using family trios with schizophrenia

Biochem Biophys Res Commun. 1998 Oct 20;251(2):662-5. doi: 10.1006/bbrc.1998.9484.

Abstract

hKCa3 is a neuronal small conductance calcium-activated potassium channel which contains a polyglutamine tract, encoded by a polymorphic CAG repeat in the gene. Since an association between longer alleles of the CAG repeat and schizophrenia has been reported, we performed haplotype-based haplotype relative risk (HHRR) and transmission disequilibrium (TDT) in 97 family trios with schizophrenia from SW China. We found no evidence for an excess of longer CAG repeats in the patients, and the ETDT test was not significant for either allele-wise (P = 0.31) or genotype-wise analysis (P = 0.18). However, there was a deficit of transmission of the (CAG)20 repeat allele to affected offspring when this allele was considered individually by TDT (P = 0.012; not corrected for multiple testing). These data do not support a role for larger alleles at the hKCa3 locus in psychosis in Chinese subjects.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Alleles
  • China
  • Chromosome Mapping
  • Chromosomes, Human, Pair 1*
  • Female
  • Genotype
  • Haplotypes
  • Humans
  • Linkage Disequilibrium*
  • Male
  • Middle Aged
  • Molecular Sequence Data
  • Potassium Channels / genetics*
  • Potassium Channels, Calcium-Activated*
  • Risk
  • Schizophrenia / genetics*
  • Small-Conductance Calcium-Activated Potassium Channels
  • Trinucleotide Repeats*

Substances

  • KCNN3 protein, human
  • Potassium Channels
  • Potassium Channels, Calcium-Activated
  • Small-Conductance Calcium-Activated Potassium Channels

Associated data

  • GENBANK/AF031815