Single-Cell RNA-Seq Reveals that CD9 Is a Negative Marker of Glucose-Responsive Pancreatic β-like Cells Derived from Human Pluripotent Stem Cells

Stem Cell Reports. 2020 Nov 10;15(5):1111-1126. doi: 10.1016/j.stemcr.2020.09.009. Epub 2020 Oct 22.

Abstract

To date, it remains unclear if there are specific cell-surface markers for purifying glucose-responsive pancreatic β-like cells derived from human pluripotent stem cells (hPSCs). In searching for this, we generated an efficient protocol for differentiating β-like cells from human embryonic stem cells. We performed single-cell RNA sequencing and found that CD9 is a negative cell-surface marker of β-like cells, as most INS+ cells are CD9-. We purified β-like cells for spontaneous formation of islet-like organoids against CD9, and found significantly more NKX6.1+MAFA+C-PEPTIDE+ β-like cells in the CD9- than in the CD9+ population. CD9- cells also demonstrate better glucose responsiveness than CD9+ cells. In humans, we observe more CD9+C-PEPTIDE+ β cells in the fetal than in the adult cadaveric islets and more Ki67+ proliferating cells among CD9+ fetal β cells. Taken together, our experiments show that CD9 is a cell-surface marker for negative enrichment of glucose-responsive β-like cells differentiated from hPSCs.

Keywords: CD9; cell-surface marker; human embryonic stem cells; human pluripotent stem cells; pancreatic β cells; single-cell transcriptomics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Biomarkers / metabolism
  • C-Peptide / genetics
  • C-Peptide / metabolism
  • Cell Differentiation
  • Cell Line
  • Cells, Cultured
  • Genome-Wide Association Study
  • Glucose / metabolism
  • Homeodomain Proteins / genetics
  • Homeodomain Proteins / metabolism
  • Human Embryonic Stem Cells / cytology
  • Human Embryonic Stem Cells / metabolism*
  • Humans
  • Insulin-Secreting Cells / metabolism*
  • Islets of Langerhans / cytology
  • Islets of Langerhans / metabolism
  • Maf Transcription Factors, Large / genetics
  • Maf Transcription Factors, Large / metabolism
  • Organoids / metabolism
  • Pluripotent Stem Cells / metabolism*
  • RNA-Seq
  • Single-Cell Analysis
  • Tetraspanin 29 / genetics
  • Tetraspanin 29 / metabolism*
  • Transcriptome

Substances

  • Biomarkers
  • C-Peptide
  • CD9 protein, human
  • Homeodomain Proteins
  • MAFA protein, human
  • Maf Transcription Factors, Large
  • NKX6-1 protein, human
  • Tetraspanin 29
  • Glucose