Glutarylation of Histone H4 Lysine 91 Regulates Chromatin Dynamics

Mol Cell. 2019 Nov 21;76(4):660-675.e9. doi: 10.1016/j.molcel.2019.08.018. Epub 2019 Sep 18.

Abstract

Histone posttranslational modifications (PTMs) regulate chromatin structure and dynamics during various DNA-associated processes. Here, we report that lysine glutarylation (Kglu) occurs at 27 lysine residues on human core histones. Using semi-synthetic glutarylated histones, we show that an evolutionarily conserved Kglu at histone H4K91 destabilizes nucleosome in vitro. In Saccharomyces cerevisiae, the replacement of H4K91 by glutamate that mimics Kglu influences chromatin structure and thereby results in a global upregulation of transcription and defects in cell-cycle progression, DNA damage repair, and telomere silencing. In mammalian cells, H4K91glu is mainly enriched at promoter regions of highly expressed genes. A downregulation of H4K91glu is tightly associated with chromatin condensation during mitosis and in response to DNA damage. The cellular dynamics of H4K91glu is controlled by Sirt7 as a deglutarylase and KAT2A as a glutaryltransferase. This study designates a new histone mark (Kglu) as a new regulatory mechanism for chromatin dynamics.

Keywords: DNA damage; KAT2A; Sirt7; chemical reporter; chromatin condensation; epigenetics; histone lysine glutarylation; nucleosome dynamics; α-KADH.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Chromatin Assembly and Disassembly*
  • DNA Damage*
  • Glutarates / metabolism*
  • HEK293 Cells
  • HL-60 Cells
  • HeLa Cells
  • Hep G2 Cells
  • Histone Acetyltransferases / genetics
  • Histone Acetyltransferases / metabolism
  • Histones / metabolism*
  • Humans
  • Lysine
  • Mice
  • Mitosis*
  • Nucleosomes / genetics
  • Nucleosomes / metabolism*
  • Protein Processing, Post-Translational*
  • RAW 264.7 Cells
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / growth & development
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism*
  • Sirtuins / genetics
  • Sirtuins / metabolism
  • Time Factors

Substances

  • Glutarates
  • Histones
  • Nucleosomes
  • SIRT7 protein, human
  • Saccharomyces cerevisiae Proteins
  • Histone Acetyltransferases
  • KAT2A protein, human
  • Sirtuins
  • Lysine