The Good, the Bad, and the Ugly: in search of gold standards for assessing functional genetic screen quality

Mol Syst Biol. 2014 Jul 1;10(7):738. doi: 10.15252/msb.20145372.

Abstract

Variable screen quality, off-target effects, and unclear false discovery rates often hamper large-scale functional genomic screens in mammalian cells. Hart et al (2014) introduce gold standard reference sets of essential and non-essential genes, aiming at standardizing the analysis of genome-wide screens. This work provides a framework to compare both the quality and analysis methods of functional genetic screens.

Publication types

  • News

MeSH terms

  • Cell Line, Tumor
  • Genes, Essential*
  • Genetic Fitness
  • Genetic Techniques / standards*
  • Genome, Human
  • Humans
  • Models, Theoretical
  • Neoplasms / genetics*
  • Reference Standards
  • Software