Functional genomic analysis of the periodic transcriptome in the developing Drosophila wing

Dev Cell. 2014 Apr 14;29(1):112-27. doi: 10.1016/j.devcel.2014.02.018. Epub 2014 Mar 27.

Abstract

The eukaryotic cell cycle, driven by both transcriptional and posttranslational mechanisms, is the central molecular oscillator underlying tissue growth throughout animals. Although genome-wide studies have investigated cell-cycle-associated transcription in unicellular systems, global patterns of periodic transcription in multicellular tissues remain largely unexplored. Here we define the cell-cycle-associated transcriptome of the developing Drosophila wing epithelium and compare it with that of cultured Drosophila S2 cells, revealing a core set of periodic genes and a surprising degree of context specificity in periodic transcription. We further employ RNAi-mediated phenotypic profiling to define functional requirements for more than 300 periodic genes, with a focus on those required for cell proliferation in vivo. Finally, we investigate uncharacterized genes required for interkinetic nuclear migration. Combined, these findings provide a global perspective on cell-cycle control in vivo, and they highlight a critical need to understand the context-specific regulation of cell proliferation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Cycle Proteins / genetics
  • Cell Cycle Proteins / metabolism*
  • Drosophila / embryology
  • Drosophila / genetics*
  • Drosophila / metabolism
  • Epithelial Cells / cytology
  • Epithelial Cells / metabolism
  • Gene Expression Regulation, Developmental
  • Genes, Developmental
  • Genome, Insect*
  • RNA, Long Noncoding / genetics
  • RNA, Long Noncoding / metabolism
  • Transcriptome*
  • Wings, Animal / cytology
  • Wings, Animal / embryology*

Substances

  • Cell Cycle Proteins
  • RNA, Long Noncoding

Associated data

  • GEO/GSE54928