High resolution melting: improvements in the genetic diagnosis of hypertrophic cardiomyopathy in a Portuguese cohort

BMC Med Genet. 2012 Mar 19:13:17. doi: 10.1186/1471-2350-13-17.

Abstract

Background: Hypertrophic Cardiomyopathy (HCM) is a complex myocardial disorder with a recognized genetic heterogeneity. The elevated number of genes and mutations involved in HCM limits a gene-based diagnosis that should be considered of most importance for basic research and clinical medicine.

Methodology: In this report, we evaluated High Resolution Melting (HRM) robustness, regarding HCM genetic testing, by means of analyzing 28 HCM-associated genes, including the most frequent 4 HCM-associated sarcomere genes, as well as 24 genes with lower reported HCM-phenotype association. We analyzed 80 Portuguese individuals with clinical phenotype of HCM allowing simultaneously a better characterization of this disease in the Portuguese population.

Results: HRM technology allowed us to identify 60 mutated alleles in 72 HCM patients: 49 missense mutations, 3 nonsense mutations, one 1-bp deletion, one 5-bp deletion, one in frame 3-bp deletion, one insertion/deletion, 3 splice mutations, one 5'UTR mutation in MYH7, MYBPC3, TNNT2, TNNI3, CSRP3, MYH6 and MYL2 genes. Significantly 22 are novel gene mutations.

Conclusions: HRM was proven to be a technique with high sensitivity and a low false positive ratio allowing a rapid, innovative and low cost genotyping of HCM. In a short return, HRM as a gene scanning technique could be a cost-effective gene-based diagnosis for an accurate HCM genetic diagnosis and hopefully providing new insights into genotype/phenotype correlations.

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Aged, 80 and over
  • Biometry
  • Cardiac Myosins / genetics
  • Cardiomyopathy, Hypertrophic / diagnosis*
  • Cardiomyopathy, Hypertrophic / genetics*
  • Carrier Proteins / genetics
  • Cohort Studies
  • Computational Biology
  • Exons / genetics
  • Female
  • Genetic Variation
  • Genome, Human / genetics
  • Humans
  • Male
  • Middle Aged
  • Mutation / genetics
  • Myosin Heavy Chains / genetics
  • Nucleic Acid Denaturation / genetics*
  • Polymerase Chain Reaction
  • Portugal
  • Troponin T / genetics
  • Young Adult

Substances

  • Carrier Proteins
  • MYH6 protein, human
  • MYH7 protein, human
  • TNNT2 protein, human
  • Troponin T
  • myosin-binding protein C
  • Cardiac Myosins
  • Myosin Heavy Chains