Parental LTRs are important in a construct of a stable and efficient replication-competent infectious molecular clone of HIV-1 CRF08_BC

PLoS One. 2012;7(2):e31233. doi: 10.1371/journal.pone.0031233. Epub 2012 Feb 17.

Abstract

Circulating recombinant forms (CRFs) of HIV-1 have been identified in southern China in recent years. CRF08_BC is one of the most predominant subtypes circulating in China. In order to study HIV subtype biology and to provide a tool for biotechnological applications, the first full-length replication-competent infectious molecular clone harboring CRF08_BC is reported. The construction of this clone pBRGX indicates that a moderate-copy number vector is required for its amplification in E. coli. In addition, it is shown that the parental CRF08_BC LTRs are important for generating this efficient replication-competent infectious clone. These observations may aid in the construction of infectious clones from other subtypes. Both the pBRGX-derived virus and its parental isolate contain CCR5 tropism. Their full-length genomes were also sequenced, analyzed, compared and deposited in GenBank (JF719819 and JF719818, respectively). The availability of pBRGX as the first replication-competent molecular clone of CRF08_BC provides a useful tool for a wide range of studies of this newly emergent HIV subtype, including the development of HIV vaccine candidates, antiviral drug screening and drug resistance analysis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution / genetics
  • Base Sequence
  • Clone Cells
  • DNA, Viral / genetics
  • Genome, Viral / genetics
  • HIV Infections
  • HIV-1 / classification
  • HIV-1 / genetics*
  • HIV-1 / physiology*
  • Humans
  • Kinetics
  • Molecular Sequence Data
  • Mutation / genetics
  • Phylogeny
  • Plasmids / genetics
  • Receptors, CCR5 / metabolism
  • Recombination, Genetic / genetics
  • Sequence Alignment
  • Terminal Repeat Sequences / genetics*
  • Tropism / genetics
  • Virus Replication / genetics*

Substances

  • DNA, Viral
  • Receptors, CCR5

Associated data

  • GENBANK/JF719818
  • GENBANK/JF719819