Generating probabilistic Boolean networks from a prescribed transition probability matrix

IET Syst Biol. 2009 Nov;3(6):453-64. doi: 10.1049/iet-syb.2008.0173.

Abstract

Probabilistic Boolean networks (PBNs) have received much attention in modeling genetic regulatory networks. A PBN can be regarded as a Markov chain process and is characterised by a transition probability matrix. In this study, the authors propose efficient algorithms for constructing a PBN when its transition probability matrix is given. The complexities of the algorithms are also analysed. This is an interesting inverse problem in network inference using steady-state data. The problem is important as most microarray data sets are assumed to be obtained from sampling the steady-state.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Algorithms
  • Gene Regulatory Networks*
  • Markov Chains
  • Models, Genetic*
  • Models, Statistical*
  • Systems Biology / methods*