A CR1 element is embedded in a novel tandem repeat (HinfI repeat) within the chicken genome

Genome. 2006 Feb;49(2):97-103. doi: 10.1139/g05-090.

Abstract

Highly repetitive DNA sequences constitute a significant portion of most eukaryotic genomes, raising questions about their evolutionary origins and amplification dynamics. In this study, a novel chicken repetitive DNA family, the HinfI repeat, was characterized. The basic repeating unit of this family displays a uniform length of 770 bp, which was defined by the recognition site of HinfI. The HinfI repeat was specifically localized in the pericentric region of chromosome 4 by fluorescence in situ hybridization and constitutes 0.51% of the chicken genome. Interestingly, a chicken repeat 1 (CR1) element has been identified within this basic repeating unit. Like other CR1 elements, this CR1 element also displays typical retrotransposition characteristics, including a highly conserved 3' region and a badly truncated 5' end. This direct evidence from sequence analysis, together with our Southern blot results, suggests that the HinfI repeat may originate from a unique region containing a retrotransposed CR1 element.

MeSH terms

  • Animals
  • Base Sequence
  • Chickens
  • Deoxyribonucleases, Type II Site-Specific / genetics
  • Genome
  • In Situ Hybridization, Fluorescence
  • Models, Genetic
  • Molecular Sequence Data
  • Retroelements / genetics
  • Sequence Analysis, DNA / methods*
  • Sequence Homology, Nucleic Acid
  • Tandem Repeat Sequences*

Substances

  • Retroelements
  • Deoxyribonucleases, Type II Site-Specific
  • GANTC-specific type II deoxyribonucleases