Structure and chromosomal DNA binding of the SWIRM domain

Nat Struct Mol Biol. 2005 Dec;12(12):1078-85. doi: 10.1038/nsmb1022. Epub 2005 Nov 20.

Abstract

The evolutionarily conserved Swi3p, Rsc8p and Moira (SWIRM) domain is found in many chromosomal proteins involved in chromatin modifications or remodeling. Here we report the three-dimensional solution structure of the SWIRM domain from the human transcriptional adaptor ADA2alpha. The structure reveals a five-helix bundle consisting of two helix-turn-helix motifs connected by a central long helix, reminiscent of the histone fold. Using structural and biochemical analyses, we showed that the SWIRM domains of human ADA2alpha and SMARC2 bind to double-stranded and nucleosomal DNA, and we identified amino acid residues required for this function. We demonstrated that the ADA2alpha SWIRM domain is colocalized with lysine-acetylated histone H3 in the cell nucleus and that it potentiates the ACF remodeling activity by enhancing accessibility of nucleosomal linker DNA bound to histone H1. These data suggest a functional role of the SWIRM domain in chromatin remodeling.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Adaptor Proteins, Signal Transducing / analysis
  • Adaptor Proteins, Signal Transducing / chemistry*
  • Adaptor Proteins, Signal Transducing / metabolism*
  • Amino Acid Sequence
  • Cell Nucleus / chemistry
  • Chromatin / metabolism
  • Chromatin Assembly and Disassembly*
  • Chromosomes / metabolism
  • DNA / metabolism
  • DNA-Binding Proteins
  • Helix-Turn-Helix Motifs
  • Histones / analysis
  • Histones / metabolism
  • Humans
  • Molecular Sequence Data
  • Nucleosomes / metabolism
  • Protein Structure, Tertiary
  • Transcription Factors / analysis
  • Transcription Factors / chemistry*
  • Transcription Factors / metabolism*

Substances

  • Adaptor Proteins, Signal Transducing
  • Chromatin
  • DNA-Binding Proteins
  • Histones
  • Nucleosomes
  • TADA2A protein, human
  • Transcription Factors
  • DNA

Associated data

  • PDB/2AQE