Protein Family Models

This domain is found near the C-terminus of bacterial ATP-dependent helicases such as HrpB. (from Pfam)

Date:

2023-12-12

The helicase associated domain (HA2) has an all alpha-helical fold and consists of a N-terminal winged-helix (WH) domain and a C-terminal degenerate helical-bundle domain, referred to as the ratchet-like domain [1,2,3]. These domains collaborate with RecA domains at the N-terminal in completing an RNA binding channel to allow the helicases to keep a stable grip on the RNA [3] and assure its correct function. This entry represents the WH domain, which connects the N- (RecA domains) and C-terminal domains (ratchet-like and OB-fold) of helicases. [1]. 26545078. Structure of the RNA Helicase MLE Reveals the Molecular. Mechanisms for Uridine Specificity and RNA-ATP Coupling.. Prabu JR, Muller M, Thomae AW, Schussler S, Bonneau F, Becker. PB, Conti E;. Mol Cell. 2015;60:487-499.. [2]. 31409651. Structural and functional characterisation of human RNA helicase. DHX8 provides insights into the mechanism of RNA-stimulated ADP. release.. Felisberto-Rodrigues C, Thomas JC, McAndrew C, Le Bihan YV,. Burke R, Workman P, van Montfort RLM;. Biochem J. 2019;476:2521-2543.. [3]. 32179686. Structural basis for DEAH-helicase activation by G-patch. proteins.. Studer MK, Ivanovic L, Weber ME, Marti S, Jonas S;. Proc Natl Acad Sci U S A. 2020;117:7159-7170. (from Pfam)

Date:

2024-04-03

Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. [1]. 10322435. Unwinding RNA in Saccharomyces cerevisiae: DEAD-box proteins and. related families.. de la Cruz J, Kressler D, Linder P;. Trends Biochem Sci 1999;24:192-198.. [2]. 9862990. The DEAD box RNA helicase family in Arabidopsis thaliana.. Aubourg S, Kreis M, Lecharny A;. Nucleic Acids Res 1999;27:628-636. (from Pfam)

Date:

2024-04-03

The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. (from Pfam)

Date:

2023-12-12

This HMM represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. A structural study confirmed binding to RNA only.

Gene:

hrpB

Date:

2024-02-28