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Series GSE8688 Query DataSets for GSE8688
Status Public on May 28, 2009
Title rdi1∆ vs WT during macrophage co-culture
Platform organism Cryptococcus neoformans var. neoformans
Sample organism Cryptococcus neoformans var. grubii H99
Experiment type Expression profiling by array
Summary Rho-GDP dissociation inhibitors (RDI) are repressors of Rho-type monomeric GTPases that allow for precise control of their target processes, e.g. cytoskeletal arrangement, vesicle trafficking, and polarized growth. In the human pathogenic yeast Cryptococcus neoformans, maintenance of normal cell morphology is vital for pathogenicity. We identified and deleted the gene encoding an RDI homolog in the human fungal pathogen Cryptococcus neoformans and investigated its impact on pathogenicity in animal models of cryptococcosis. Rdi1 deletion resulted in altered vacuole size in tissue culture medium, with corresponding alterations in expression of vesicle trafficking related genes. The rdi1∆ mutant strain showed reduced intracellular survival in macrophages, and severe attenuation of virulence in murine models of cryptococcosis. This reduction in virulence of the rdi1 mutant occurs in the absence of major defects in growth, morphology, or classical virulence-associated phenotypes.
Keywords: mutant response, macrophage co-culture
 
Overall design WT and rdi1∆ total RNA were compared in a dye-swap experiment. One culture of each representing a population of each strain were incubated with macrophages at a ratio of 10:1 (yeast:macrophage). The co-cultures were incubated for 1hour at 37°C, 5% CO2 in tissue culture medium.
 
Contributor(s) Price MS, Nichols CB, Clements MF, Alspaugh A
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Submission date Aug 03, 2007
Last update date Mar 17, 2012
Contact name Michael S Price
E-mail(s) msprice2@liberty.edu
Phone 434-592-7277
Organization name Liberty University
Department Biology & Chemistry
Street address 1971 University Blvd.
City Lynchburg
State/province VA
ZIP/Postal code 24515
Country USA
 
Platforms (1)
GPL4009 UBC/MSL C. neoformans serotype D 70K
Samples (1)
GSM215377 rdi1∆ mutant vs Wild-type in macrophage co-culture
Relations
BioProject PRJNA101905

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE8688_RAW.tar 3.4 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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