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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 21, 2004 |
| Title |
ENCODE: GWLA of TAF1, RNA PolII binding in four cell lines |
| Project |
Pilot ENCODE
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| Organism |
Homo sapiens |
| Experiment type |
Genome binding/occupancy profiling by genome tiling array
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| Summary |
Genome-wide location analysis of TAF1 and RNA polymerase II binding in ENCODE regions of IMR90, HCT116, HeLa and THP1 cell lines. There are a total of 8 experiments, each with three replicates.
Details of chromatin immunoprecipitation and data analysis can be found at
Li Z, van Calcar S, Qu C, Cavenee WK, Zhang MQ, Ren B (2003) A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells. PNAS, 100:8184-8169.
Keywords: other
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| Web link |
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
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| Contributor(s) |
Kim T, Barrera LO, van Calcar S, Ren B |
| Citation(s) |
15899964, 17571346 |
| BioProject |
PRJNA63421 |
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| Submission date |
Sep 17, 2004 |
| Last update date |
Sep 14, 2012 |
| Contact name |
Chunxu Qu |
| E-mail(s) |
qchunxu@ucsd.edu
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| Phone |
(858)822-5767
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| Organization name |
Ludwig Institute for Cancer Research
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| Department |
Gene Regulation
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| Lab |
RenLab
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| Street address |
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| City |
San Diego |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
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| Platforms (1) |
| GPL1454 |
RenLab ENCODE PCR tiling array |
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| Samples (24)
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| Supplementary file |
Size |
Download |
File type/resource |
| GSE1778.README.txt |
411 b |
(ftp)(http) |
TXT |
| GSE1778_RAW.tar |
2.3 Gb |
(http)(custom) |
TAR (of TIFF) |
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