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Status
Public on Nov 05, 2004
Title
Hopkins Tag Array
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Saccharomyces cerevisiae
Description
Comprehensive array of all 6018 UpTag/DnTag pairs designed for incorporation into yeast deletion strains by the Yeast Deletion Project (June 2002).
Contributor(s)
Yuan DS , Boeke JD Citation(s)
15994458 Submission date
Sep 13, 2004
Last update date
Jul 20, 2005
Contact name
Xuewen Pan
E-mail(s)
xpan2@jhmi.edu Phone
410-955-2477
Organization name
Johns Hopkins University School of Medicine
Department
Department of Molecular Biology and Genetics
Lab
Boeke Lab
Street address
733 N. Broadway, Room 331
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Samples (218)
GSM30549 , GSM30550 , GSM30551 , GSM30552 , GSM30553 , GSM30554
GSM30555 ,
GSM30556 ,
GSM30557 ,
GSM30558 ,
GSM30559 ,
GSM30560 ,
GSM30561 ,
GSM30570 ,
GSM30571 ,
GSM30572 ,
GSM30573 ,
GSM30574 ,
GSM30575 ,
GSM30576 ,
GSM30577 ,
GSM30578 ,
GSM30579 ,
GSM61945 ,
GSM61948 ,
GSM61949 ,
GSM61950 ,
GSM61951 ,
GSM81980 ,
GSM81981 ,
GSM81982 ,
GSM81983 ,
GSM81984 ,
GSM81985 ,
GSM81987 ,
GSM81988 ,
GSM81989 ,
GSM81990 ,
GSM81991 ,
GSM81992 ,
GSM81993 ,
GSM81994 ,
GSM81995 ,
GSM81996 ,
GSM81997 ,
GSM81998 ,
GSM81999 ,
GSM82000 ,
GSM82001 ,
GSM82002 ,
GSM82003 ,
GSM82004 ,
GSM82005 ,
GSM82006 ,
GSM82007 ,
GSM82008 ,
GSM82009 ,
GSM82010 ,
GSM82011 ,
GSM82012 ,
GSM82013 ,
GSM82014 ,
GSM82015 ,
GSM82016 ,
GSM82017 ,
GSM82018 ,
GSM82019 ,
GSM82020 ,
GSM82021 ,
GSM82022 ,
GSM82023 ,
GSM82024 ,
GSM82025 ,
GSM82026 ,
GSM82027 ,
GSM82028 ,
GSM82029 ,
GSM82030 ,
GSM82031 ,
GSM82032 ,
GSM82033 ,
GSM82034 ,
GSM82035 ,
GSM82036 ,
GSM82037 ,
GSM82038 ,
GSM82039 ,
GSM82040 ,
GSM82041 ,
GSM82042 ,
GSM82043 ,
GSM82044 ,
GSM82045 ,
GSM82046 ,
GSM82047 ,
GSM82048 ,
GSM82049 ,
GSM82050 ,
GSM82051 ,
GSM82052 ,
GSM82053 ,
GSM82054 ,
GSM82055 ,
GSM82056 ,
GSM82057 ,
GSM82058 ,
GSM82059 ,
GSM82060 ,
GSM82061 ,
GSM82062 ,
GSM82063 ,
GSM82064 ,
GSM82065 ,
GSM82066 ,
GSM82067 ,
GSM82068 ,
GSM82069 ,
GSM82070 ,
GSM82071 ,
GSM82072 ,
GSM82073 ,
GSM82074 ,
GSM82075 ,
GSM82076 ,
GSM82077 ,
GSM82078 ,
GSM82079 ,
GSM82080 ,
GSM82081 ,
GSM82082 ,
GSM82083 ,
GSM82084 ,
GSM82085 ,
GSM82086 ,
GSM82087 ,
GSM82088 ,
GSM82089 ,
GSM82090 ,
GSM82091 ,
GSM82092 ,
GSM82093 ,
GSM82094 ,
GSM82095 ,
GSM82096 ,
GSM82097 ,
GSM82098 ,
GSM82099 ,
GSM85470 ,
GSM85471 ,
GSM94607 ,
GSM138553 ,
GSM138554 ,
GSM138555 ,
GSM138556 ,
GSM138557 ,
GSM138558 ,
GSM138559 ,
GSM138560 ,
GSM138561 ,
GSM246442 ,
GSM246443 ,
GSM246444 ,
GSM246445 ,
GSM246446 ,
GSM246447 ,
GSM246448 ,
GSM246449 ,
GSM246450 ,
GSM246451 ,
GSM246452 ,
GSM246453 ,
GSM246454 ,
GSM246455 ,
GSM246456 ,
GSM246457 ,
GSM246458 ,
GSM246459 ,
GSM246460 ,
GSM246461 ,
GSM246462 ,
GSM246463 ,
GSM246464 ,
GSM246465 ,
GSM246466 ,
GSM246467 ,
GSM246468 ,
GSM246469 ,
GSM246470 ,
GSM246471 ,
GSM246472 ,
GSM246473 ,
GSM246474 ,
GSM246475 ,
GSM246476 ,
GSM246477 ,
GSM246478 ,
GSM246479 ,
GSM246480 ,
GSM246481 ,
GSM246482 ,
GSM246483 ,
GSM254974 ,
GSM254975 ,
GSM319211 ,
GSM319212 ,
GSM319213 ,
GSM319214 ,
GSM319215 ,
GSM319216 ,
GSM319217 ,
GSM319218 ,
GSM319219 ,
GSM319220 ,
GSM524004 ,
GSM524005 ,
GSM524006 ,
GSM946550 ,
GSM946551 Series (16)
GSE1758 CDC102 synthetic lethality
GSE1759 LCD1-overexpression synthetic lethality
GSE1760 TUB1 synthetic haploinsufficiency
GSE1765 SML1 synthetic lethality
GSE1838 dSLAM
GSE2832 Improved statistical analysis of budding yeast TAG microarrays
GSE3574 A DNA integrity network in the yeast Saccharomyces cerevisiae
GSE4144 Synthetic lethality/slow growth with acs2-Ts8
GSE5973 Trivalent arsenic inhibits the functions of chaperonin complex
GSE9771 A comprehensive synthetic genetic interaction network governing yeast histone acetylation and deacetylation
GSE12733 Phenotypic profiling of adaptation to oxidative stress
GSE20961 Functional Variomics Library testing for drug resistance in yeast
GSE38601 The Fun30 ATP-dependent nucleosome remodeler promotes resection of DNA double-strand break ends
Data table header descriptions ID Serial identifier for probe
ROW Row number in the array as scanned with GenePix scanner
COLUMN Column number in the array as scanned with GenePix scanner
TAGTYPE Code for whether tag is 5' (Up) or 3' (Dn) relative to the open reading frame (ORF)
PROBE Code for singleton probes arrayed in ORF order (ArrA, ArrB), five-fold replicate probes arrayed in randomized order (Rpts), systematic mutations arrayed across the center of the array (Muts), negative controls (NegT), or probes peripheral to the array as specified by the manufacturer (Edge)
ORF Systematic ORF name (from SGD, Feb 2003)
GENE Standard gene name (SGD) (or ORF if not available)
SEQUENCE DNA sequence of probe (includes custom-designed sequences for 193 YA* and YM* ORFs missing DnTags)
SGDID Unique ORF identifier from SGD; 'S000000000' denotes missing value
SPOT_ID spot identifier; ('YQL' ORFs denote custom-designed sequences; 'NegA', 'NegB', 'PosA', 'PosB' denote proprietary sequences specified by the manufacturer)
Data table ID ROW COLUMN TAGTYPE PROBE ORF GENE SEQUENCE SGDID SPOT_ID 1
213
104
Up
ArrA
YAL001C TFC3
ACTATATGTGAAGGCATGGC
S000000001
2
211
104
Up
ArrA
YAL002W VPS8
ATACTGACAGCACGCATGGC
S000000002
3
209
104
Up
ArrA
YAL003W EFB1
GACATATCAGCATACATGGC
S000000003
4
207
104
Up
ArrA
YAL004W YAL004W
TATGGCACGGCAGACATTCC
S000002136
5
205
104
Up
ArrA
YAL005C SSA1
AGGCATACTACACAGATTCC
S000000004
6
203
104
Up
ArrA
YAL007C ERP2
GAGTGATCCATACACATTCC
S000000005
7
201
104
Up
ArrA
YAL008W FUN14
ATGAACTTGCGCTCAATTCC
S000000006
8
199
104
Up
ArrA
YAL009W SPO7
GCCAGATCATCAATAGGCAC
S000000007
9
197
104
Up
ArrA
YAL010C MDM10
CACTATATGTCAACAGGCAC
S000000008
10
195
104
Up
ArrA
YAL011W SWC1
CAGTAATCAGAAGCTCGCAC
S000000009
11
193
104
Up
ArrA
YAL012W CYS3
TAGCACACGGTCGAATTTCC
S000000010
12
191
104
Up
ArrA
YAL013W DEP1
GATACGCGCCAATCTCTATA
S000000011
13
189
104
Up
ArrA
YAL014C SYN8
CCGCATACCGAATTGCTATA
S000000012
14
187
104
Up
ArrA
YAL015C NTG1
GCGCAGAAGGCAATGCTATA
S000000013
15
185
104
Up
ArrA
YAL016W TPD3
CGCCTAAGACCGGATAAAGC
S000000014
16
183
104
Up
ArrA
YAL017W PSK1
GCACATCTGACAACAGGCGA
S000000015
17
181
104
Up
ArrA
YAL018C YAL018C
CATACACGTAAAGTGCGCGA
S000000016
18
179
104
Up
ArrA
YAL019W FUN30
TGCACAGCGACAATACGCGA
S000000017
19
177
104
Up
ArrA
YAL020C ATS1
CGATTCGATAAATGACGCGA
S000000018
20
175
104
Up
ArrA
YAL021C CCR4
CAGTCGATCACAAGCGAGCA
S000000019
22575 1494 Kbytes .Supplementary data files not provided
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