Name: rs3752953
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs3752953

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr1:113699628 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: C>T
Variation Type: SNV Single Nucleotide Variation
Frequency: T=0.212857 (56341/264690, TOPMED)
T=0.213632 (29900/139960, GnomAD)
T=0.17220 (13445/78078, PAGE_STUDY) (+ 20 more)
T=0.06837 (1932/28256, 14KJPN)
T=0.23257 (5570/23950, ALFA)
T=0.07124 (1194/16760, 8.3KJPN)
T=0.2027 (1298/6404, 1000G_30x)
T=0.2011 (1007/5008, 1000G)
T=0.2058 (922/4480, Estonian)
T=0.2626 (1012/3854, ALSPAC)
T=0.2581 (957/3708, TWINSUK)
T=0.0856 (250/2922, KOREAN)
T=0.1675 (317/1892, HapMap)
T=0.0617 (113/1832, Korea1K)
T=0.244 (244/998, GoNL)
T=0.201 (126/626, Chileans)
T=0.230 (138/600, NorthernSweden)
T=0.300 (160/534, MGP)
T=0.278 (60/216, Qatari)
T=0.182 (39/214, Vietnamese)
C=0.399 (83/208, SGDP_PRJ)
T=0.30 (12/40, GENOME_DK)
C=0.47 (14/30, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: PHTF1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	23950	C=0.76743	T=0.23257
European	Sub	15666	C=0.74844	T=0.25156
African	Sub	3616	C=0.8659	T=0.1341
African Others	Sub	126	C=0.881	T=0.119
African American	Sub	3490	C=0.8653	T=0.1347
Asian	Sub	160	C=0.875	T=0.125
East Asian	Sub	102	C=0.902	T=0.098
Other Asian	Sub	58	C=0.83	T=0.17
Latin American 1	Sub	292	C=0.774	T=0.226
Latin American 2	Sub	2762	C=0.7545	T=0.2455
South Asian	Sub	110	C=0.609	T=0.391
Other	Sub	1344	C=0.7493	T=0.2507

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

Download

Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	C=0.787143	T=0.212857
gnomAD - Genomes	Global	Study-wide	139960	C=0.786368	T=0.213632
gnomAD - Genomes	European	Sub	75810	C=0.74408	T=0.25592
gnomAD - Genomes	African	Sub	41934	C=0.86171	T=0.13829
gnomAD - Genomes	American	Sub	13626	C=0.77785	T=0.22215
gnomAD - Genomes	Ashkenazi Jewish	Sub	3322	C=0.7378	T=0.2622
gnomAD - Genomes	East Asian	Sub	3122	C=0.9045	T=0.0955
gnomAD - Genomes	Other	Sub	2146	C=0.7651	T=0.2349
The PAGE Study	Global	Study-wide	78078	C=0.82780	T=0.17220
The PAGE Study	AfricanAmerican	Sub	32242	C=0.85947	T=0.14053
The PAGE Study	Mexican	Sub	10716	C=0.76484	T=0.23516
The PAGE Study	Asian	Sub	8264	C=0.9176	T=0.0824
The PAGE Study	PuertoRican	Sub	7860	C=0.7953	T=0.2047
The PAGE Study	NativeHawaiian	Sub	4504	C=0.8661	T=0.1339
The PAGE Study	Cuban	Sub	4192	C=0.7273	T=0.2727
The PAGE Study	Dominican	Sub	3802	C=0.7864	T=0.2136
The PAGE Study	CentralAmerican	Sub	2436	C=0.7890	T=0.2110
The PAGE Study	SouthAmerican	Sub	1970	C=0.7883	T=0.2117
The PAGE Study	NativeAmerican	Sub	1254	C=0.7464	T=0.2536
The PAGE Study	SouthAsian	Sub	838	C=0.646	T=0.354
14KJPN	JAPANESE	Study-wide	28256	C=0.93163	T=0.06837
Allele Frequency Aggregator	Total	Global	23950	C=0.76743	T=0.23257
Allele Frequency Aggregator	European	Sub	15666	C=0.74844	T=0.25156
Allele Frequency Aggregator	African	Sub	3616	C=0.8659	T=0.1341
Allele Frequency Aggregator	Latin American 2	Sub	2762	C=0.7545	T=0.2455
Allele Frequency Aggregator	Other	Sub	1344	C=0.7493	T=0.2507
Allele Frequency Aggregator	Latin American 1	Sub	292	C=0.774	T=0.226
Allele Frequency Aggregator	Asian	Sub	160	C=0.875	T=0.125
Allele Frequency Aggregator	South Asian	Sub	110	C=0.609	T=0.391
8.3KJPN	JAPANESE	Study-wide	16760	C=0.92876	T=0.07124
1000Genomes_30x	Global	Study-wide	6404	C=0.7973	T=0.2027
1000Genomes_30x	African	Sub	1786	C=0.8919	T=0.1081
1000Genomes_30x	Europe	Sub	1266	C=0.6967	T=0.3033
1000Genomes_30x	South Asian	Sub	1202	C=0.6348	T=0.3652
1000Genomes_30x	East Asian	Sub	1170	C=0.9179	T=0.0821
1000Genomes_30x	American	Sub	980	C=0.810	T=0.190
1000Genomes	Global	Study-wide	5008	C=0.7989	T=0.2011
1000Genomes	African	Sub	1322	C=0.8933	T=0.1067
1000Genomes	East Asian	Sub	1008	C=0.9206	T=0.0794
1000Genomes	Europe	Sub	1006	C=0.6998	T=0.3002
1000Genomes	South Asian	Sub	978	C=0.635	T=0.365
1000Genomes	American	Sub	694	C=0.817	T=0.183
Genetic variation in the Estonian population	Estonian	Study-wide	4480	C=0.7942	T=0.2058
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.7374	T=0.2626
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.7419	T=0.2581
KOREAN population from KRGDB	KOREAN	Study-wide	2922	C=0.9144	T=0.0856
HapMap	Global	Study-wide	1892	C=0.8325	T=0.1675
HapMap	American	Sub	770	C=0.770	T=0.230
HapMap	African	Sub	692	C=0.897	T=0.103
HapMap	Asian	Sub	254	C=0.933	T=0.067
HapMap	Europe	Sub	176	C=0.705	T=0.295
Korean Genome Project	KOREAN	Study-wide	1832	C=0.9383	T=0.0617
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	C=0.756	T=0.244
Chileans	Chilean	Study-wide	626	C=0.799	T=0.201
Northern Sweden	ACPOP	Study-wide	600	C=0.770	T=0.230
Medical Genome Project healthy controls from Spanish population	Spanish controls	Study-wide	534	C=0.700	T=0.300
Qatari	Global	Study-wide	216	C=0.722	T=0.278
A Vietnamese Genetic Variation Database	Global	Study-wide	214	C=0.818	T=0.182
SGDP_PRJ	Global	Study-wide	208	C=0.399	T=0.601
The Danish reference pan genome	Danish	Study-wide	40	C=0.70	T=0.30
Siberian	Global	Study-wide	30	C=0.47	T=0.53

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 1	NC_000001.11:g.113699628C>T
GRCh37.p13 chr 1	NC_000001.10:g.114242250C>T
RPS2P14 pseudogene	NG_011213.1:g.79G>A

Gene: PHTF1, putative homeodomain transcription factor 1 (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
PHTF1 transcript variant 2	NM_001323041.2:c.2142+76G… NM_001323041.2:c.2142+76G>A	N/A	Intron Variant
PHTF1 transcript variant 3	NM_001323042.2:c.2142+76G… NM_001323042.2:c.2142+76G>A	N/A	Intron Variant
PHTF1 transcript variant 4	NM_001323043.2:c.2142+76G… NM_001323043.2:c.2142+76G>A	N/A	Intron Variant
PHTF1 transcript variant 5	NM_001323044.2:c.2016+76G… NM_001323044.2:c.2016+76G>A	N/A	Intron Variant
PHTF1 transcript variant 6	NM_001323045.2:c.2016+76G… NM_001323045.2:c.2016+76G>A	N/A	Intron Variant
PHTF1 transcript variant 7	NM_001323046.2:c.1284+76G… NM_001323046.2:c.1284+76G>A	N/A	Intron Variant
PHTF1 transcript variant 1	NM_006608.3:c.2142+76G>A	N/A	Intron Variant
PHTF1 transcript variant 8	NM_001323047.2:c.	N/A	Genic Downstream Transcript Variant
PHTF1 transcript variant 9	NM_001323048.2:c.	N/A	Genic Downstream Transcript Variant
PHTF1 transcript variant 10	NM_001323049.2:c.	N/A	Genic Downstream Transcript Variant
PHTF1 transcript variant 11	NM_001323050.2:c.	N/A	Genic Downstream Transcript Variant
PHTF1 transcript variant 12	NM_001323051.2:c.	N/A	Genic Downstream Transcript Variant
PHTF1 transcript variant 13	NM_001323052.2:c.	N/A	Genic Downstream Transcript Variant
PHTF1 transcript variant 14	NM_001323053.2:c.	N/A	Genic Downstream Transcript Variant
PHTF1 transcript variant 15	NR_136564.2:n.	N/A	Intron Variant
PHTF1 transcript variant 16	NR_136565.2:n.	N/A	Intron Variant
PHTF1 transcript variant 17	NR_136566.2:n.	N/A	Intron Variant
PHTF1 transcript variant 18	NR_136567.2:n.	N/A	Intron Variant
PHTF1 transcript variant 19	NR_136568.2:n.	N/A	Genic Downstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	C=	T
GRCh38.p14 chr 1	NC_000001.11:g.113699628=	NC_000001.11:g.113699628C>T
GRCh37.p13 chr 1	NC_000001.10:g.114242250=	NC_000001.10:g.114242250C>T
RPS2P14 pseudogene	NG_011213.1:g.79=	NG_011213.1:g.79G>A
PHTF1 transcript variant 2	NM_001323041.2:c.2142+76=	NM_001323041.2:c.2142+76G>A
PHTF1 transcript variant 3	NM_001323042.2:c.2142+76=	NM_001323042.2:c.2142+76G>A
PHTF1 transcript variant 4	NM_001323043.2:c.2142+76=	NM_001323043.2:c.2142+76G>A
PHTF1 transcript variant 5	NM_001323044.2:c.2016+76=	NM_001323044.2:c.2016+76G>A
PHTF1 transcript variant 6	NM_001323045.2:c.2016+76=	NM_001323045.2:c.2016+76G>A
PHTF1 transcript variant 7	NM_001323046.2:c.1284+76=	NM_001323046.2:c.1284+76G>A
PHTF1 transcript variant 1	NM_006608.2:c.2142+76=	NM_006608.2:c.2142+76G>A
PHTF1 transcript variant 1	NM_006608.3:c.2142+76=	NM_006608.3:c.2142+76G>A
PHTF1 transcript variant X1	XM_005270383.1:c.2142+76=	XM_005270383.1:c.2142+76G>A
PHTF1 transcript variant X2	XM_005270384.1:c.2142+76=	XM_005270384.1:c.2142+76G>A
PHTF1 transcript variant X3	XM_005270385.1:c.2055+76=	XM_005270385.1:c.2055+76G>A
PHTF1 transcript variant X4	XM_005270386.1:c.2007+76=	XM_005270386.1:c.2007+76G>A

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

84 SubSNP, 23 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	YUSUKE	ss4938982	Aug 28, 2002 (107)
2	WI_SSAHASNP	ss11409774	Jul 11, 2003 (116)
3	SI_EXO	ss52077729	Oct 16, 2006 (127)
4	AFFY	ss76499937	Dec 07, 2007 (129)
5	BCMHGSC_JDW	ss87727051	Mar 23, 2008 (129)
6	HUMANGENOME_JCVI	ss99242254	Feb 06, 2009 (130)
7	KRIBB_YJKIM	ss104887430	Feb 06, 2009 (130)
8	BGI	ss106596123	Feb 06, 2009 (130)
9	1000GENOMES	ss108537282	Jan 23, 2009 (130)
10	ENSEMBL	ss138063387	Dec 01, 2009 (131)
11	ENSEMBL	ss139732066	Dec 01, 2009 (131)
12	COMPLETE_GENOMICS	ss165058774	Jul 04, 2010 (132)
13	COMPLETE_GENOMICS	ss167018895	Jul 04, 2010 (132)
14	BUSHMAN	ss198954630	Jul 04, 2010 (132)
15	1000GENOMES	ss218606181	Jul 14, 2010 (132)
16	1000GENOMES	ss230698569	Jul 14, 2010 (132)
17	1000GENOMES	ss238354860	Jul 15, 2010 (132)
18	GMI	ss275984614	May 04, 2012 (137)
19	PJP	ss290602248	May 09, 2011 (134)
20	TISHKOFF	ss554594612	Apr 25, 2013 (138)
21	SSMP	ss648323882	Apr 25, 2013 (138)
22	EVA-GONL	ss975587764	Aug 21, 2014 (142)
23	JMKIDD_LAB	ss1068205758	Aug 21, 2014 (142)
24	1000GENOMES	ss1292499176	Aug 21, 2014 (142)
25	DDI	ss1425942434	Apr 01, 2015 (144)
26	EVA_GENOME_DK	ss1574334121	Apr 01, 2015 (144)
27	EVA_DECODE	ss1584968599	Apr 01, 2015 (144)
28	EVA_UK10K_ALSPAC	ss1601025751	Apr 01, 2015 (144)
29	EVA_UK10K_TWINSUK	ss1644019784	Apr 01, 2015 (144)
30	EVA_MGP	ss1710916702	Apr 01, 2015 (144)
31	EVA_SVP	ss1712364420	Apr 01, 2015 (144)
32	HAMMER_LAB	ss1794958024	Sep 08, 2015 (146)
33	WEILL_CORNELL_DGM	ss1918788036	Feb 12, 2016 (147)
34	ILLUMINA	ss1958304608	Feb 12, 2016 (147)
35	GENOMED	ss1966845398	Jul 19, 2016 (147)
36	JJLAB	ss2019918446	Sep 14, 2016 (149)
37	ILLUMINA	ss2094847169	Dec 20, 2016 (150)
38	ILLUMINA	ss2094972499	Dec 20, 2016 (150)
39	USC_VALOUEV	ss2147937211	Dec 20, 2016 (150)
40	HUMAN_LONGEVITY	ss2165851047	Dec 20, 2016 (150)
41	GRF	ss2697867533	Nov 08, 2017 (151)
42	GNOMAD	ss2759751364	Nov 08, 2017 (151)
43	SWEGEN	ss2987466162	Nov 08, 2017 (151)
44	ILLUMINA	ss3021122657	Nov 08, 2017 (151)
45	BIOINF_KMB_FNS_UNIBA	ss3023723760	Nov 08, 2017 (151)
46	CSHL	ss3343642924	Nov 08, 2017 (151)
47	OMUKHERJEE_ADBS	ss3646235064	Oct 11, 2018 (152)
48	URBANLAB	ss3646756437	Oct 11, 2018 (152)
49	ILLUMINA	ss3651455239	Oct 11, 2018 (152)
50	ILLUMINA	ss3651455240	Oct 11, 2018 (152)
51	EGCUT_WGS	ss3655555026	Jul 12, 2019 (153)
52	EVA_DECODE	ss3687563967	Jul 12, 2019 (153)
53	ACPOP	ss3727403185	Jul 12, 2019 (153)
54	EVA	ss3746692728	Jul 12, 2019 (153)
55	PAGE_CC	ss3770834159	Jul 12, 2019 (153)
56	KHV_HUMAN_GENOMES	ss3799695561	Jul 12, 2019 (153)
57	EVA	ss3825572235	Apr 25, 2020 (154)
58	EVA	ss3826378802	Apr 25, 2020 (154)
59	EVA	ss3836581096	Apr 25, 2020 (154)
60	EVA	ss3841989540	Apr 25, 2020 (154)
61	SGDP_PRJ	ss3849684674	Apr 25, 2020 (154)
62	KRGDB	ss3894783099	Apr 25, 2020 (154)
63	KOGIC	ss3945281682	Apr 25, 2020 (154)
64	FSA-LAB	ss3983941166	Apr 25, 2021 (155)
65	FSA-LAB	ss3983941167	Apr 25, 2021 (155)
66	EVA	ss3986131985	Apr 25, 2021 (155)
67	TOPMED	ss4464194396	Apr 25, 2021 (155)
68	TOMMO_GENOMICS	ss5145757266	Apr 25, 2021 (155)
69	EVA	ss5237163217	Apr 25, 2021 (155)
70	1000G_HIGH_COVERAGE	ss5243667480	Oct 12, 2022 (156)
71	EVA	ss5321290224	Oct 12, 2022 (156)
72	HUGCELL_USP	ss5444585031	Oct 12, 2022 (156)
73	1000G_HIGH_COVERAGE	ss5516690485	Oct 12, 2022 (156)
74	EVA	ss5623915718	Oct 12, 2022 (156)
75	SANFORD_IMAGENETICS	ss5626331508	Oct 12, 2022 (156)
76	TOMMO_GENOMICS	ss5671048662	Oct 12, 2022 (156)
77	EVA	ss5800084110	Oct 12, 2022 (156)
78	YY_MCH	ss5800946286	Oct 12, 2022 (156)
79	EVA	ss5832506584	Oct 12, 2022 (156)
80	EVA	ss5848268414	Oct 12, 2022 (156)
81	EVA	ss5849074701	Oct 12, 2022 (156)
82	EVA	ss5909867585	Oct 12, 2022 (156)
83	EVA	ss5938199076	Oct 12, 2022 (156)
84	EVA	ss5981195957	Oct 12, 2022 (156)
85	1000Genomes	NC_000001.10 - 114242250	Oct 11, 2018 (152)
86	1000Genomes_30x	NC_000001.11 - 113699628	Oct 12, 2022 (156)
87	The Avon Longitudinal Study of Parents and Children	NC_000001.10 - 114242250	Oct 11, 2018 (152)
88	Chileans	NC_000001.10 - 114242250	Apr 25, 2020 (154)
89	Genetic variation in the Estonian population	NC_000001.10 - 114242250	Oct 11, 2018 (152)
90	The Danish reference pan genome	NC_000001.10 - 114242250	Apr 25, 2020 (154)
91	gnomAD - Genomes	NC_000001.11 - 113699628	Apr 25, 2021 (155)
92	Genome of the Netherlands Release 5	NC_000001.10 - 114242250	Apr 25, 2020 (154)
93	HapMap	NC_000001.11 - 113699628	Apr 25, 2020 (154)
94	KOREAN population from KRGDB	NC_000001.10 - 114242250	Apr 25, 2020 (154)
95	Korean Genome Project	NC_000001.11 - 113699628	Apr 25, 2020 (154)
96	Medical Genome Project healthy controls from Spanish population	NC_000001.10 - 114242250	Apr 25, 2020 (154)
97	Northern Sweden	NC_000001.10 - 114242250	Jul 12, 2019 (153)
98	The PAGE Study	NC_000001.11 - 113699628	Jul 12, 2019 (153)
99	Qatari	NC_000001.10 - 114242250	Apr 25, 2020 (154)
100	SGDP_PRJ	NC_000001.10 - 114242250	Apr 25, 2020 (154)
101	Siberian	NC_000001.10 - 114242250	Apr 25, 2020 (154)
102	8.3KJPN	NC_000001.10 - 114242250	Apr 25, 2021 (155)
103	14KJPN	NC_000001.11 - 113699628	Oct 12, 2022 (156)
104	TopMed	NC_000001.11 - 113699628	Apr 25, 2021 (155)
105	UK 10K study - Twins	NC_000001.10 - 114242250	Oct 11, 2018 (152)
106	A Vietnamese Genetic Variation Database	NC_000001.10 - 114242250	Jul 12, 2019 (153)
107	ALFA	NC_000001.11 - 113699628	Apr 25, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss87727051, ss108537282, ss165058774, ss167018895, ss198954630, ss275984614, ss290602248, ss1584968599, ss1712364420, ss2094847169	NC_000001.9:114043772:C:T	NC_000001.11:113699627:C:T	(self)
3277477, 1813228, 18988, 1293274, 1671698, 788600, 1960493, 33454, 688050, 829966, 1701654, 453565, 3726573, 1813228, 392626, ss218606181, ss230698569, ss238354860, ss554594612, ss648323882, ss975587764, ss1068205758, ss1292499176, ss1425942434, ss1574334121, ss1601025751, ss1644019784, ss1710916702, ss1794958024, ss1918788036, ss1958304608, ss1966845398, ss2019918446, ss2094972499, ss2147937211, ss2697867533, ss2759751364, ss2987466162, ss3021122657, ss3343642924, ss3646235064, ss3651455239, ss3651455240, ss3655555026, ss3727403185, ss3746692728, ss3825572235, ss3826378802, ss3836581096, ss3849684674, ss3894783099, ss3983941166, ss3983941167, ss3986131985, ss5145757266, ss5321290224, ss5623915718, ss5626331508, ss5800084110, ss5832506584, ss5848268414, ss5938199076, ss5981195957	NC_000001.10:114242249:C:T	NC_000001.11:113699627:C:T	(self)
4216420, 23181204, 158384, 1659683, 55628, 4885766, 27800731, 10877151683, ss2165851047, ss3023723760, ss3646756437, ss3687563967, ss3770834159, ss3799695561, ss3841989540, ss3945281682, ss4464194396, ss5237163217, ss5243667480, ss5444585031, ss5516690485, ss5671048662, ss5800946286, ss5849074701, ss5909867585	NC_000001.11:113699627:C:T	NC_000001.11:113699627:C:T	(self)
ss11409774	NT_019273.15:4678053:C:T	NC_000001.11:113699627:C:T	(self)
ss52077729	NT_019273.17:10328364:C:T	NC_000001.11:113699627:C:T	(self)
ss4938982, ss76499937, ss99242254, ss104887430, ss106596123, ss138063387, ss139732066	NT_032977.9:84214167:C:T	NC_000001.11:113699627:C:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs3752953

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs3752953