Name: rs1539964
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs1539964

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr18:69958049 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: C>A / C>G / C>T
Variation Type: SNV Single Nucleotide Variation
Frequency: T=0.425135 (112529/264690, TOPMED)
C=0.440832 (90404/205076, GENOGRAPHIC)
C=0.451467 (89255/197700, ALFA) (+ 20 more)
T=0.438208 (61343/139986, GnomAD)
C=0.39100 (11049/28258, 14KJPN)
C=0.38658 (6479/16760, 8.3KJPN)
T=0.4171 (2671/6404, 1000G_30x)
T=0.4279 (2143/5008, 1000G)
C=0.3886 (1741/4480, Estonian)
C=0.4170 (1607/3854, ALSPAC)
C=0.4283 (1588/3708, TWINSUK)
C=0.4126 (1208/2928, KOREAN)
C=0.4995 (1041/2084, HGDP_Stanford)
T=0.3615 (684/1892, HapMap)
C=0.4143 (759/1832, Korea1K)
C=0.405 (404/998, GoNL)
C=0.303 (182/600, NorthernSweden)
C=0.290 (120/414, SGDP_PRJ)
T=0.292 (63/216, Qatari)
T=0.481 (103/214, Vietnamese)
T=0.40 (32/80, Ancient Sardinia)
C=0.22 (12/54, Siberian)
C=0.45 (18/40, GENOME_DK)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: CD226 : Intron Variant
Publications: 1 citation
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20230706150541

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	197700	C=0.451467	T=0.548533
European	Sub	170520	C=0.435052	T=0.564948
African	Sub	7094	C=0.8793	T=0.1207
African Others	Sub	264	C=0.985	T=0.015
African American	Sub	6830	C=0.8753	T=0.1247
Asian	Sub	702	C=0.392	T=0.608
East Asian	Sub	556	C=0.379	T=0.621
Other Asian	Sub	146	C=0.438	T=0.562
Latin American 1	Sub	844	C=0.568	T=0.432
Latin American 2	Sub	6896	C=0.3982	T=0.6018
South Asian	Sub	5036	C=0.4498	T=0.5502
Other	Sub	6608	C=0.4641	T=0.5359

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	C=0.574865	T=0.425135
Genographic Project	Global	Study-wide	205076	C=0.440832	T=0.559168
Allele Frequency Aggregator	Total	Global	197700	C=0.451467	T=0.548533
Allele Frequency Aggregator	European	Sub	170520	C=0.435052	T=0.564948
Allele Frequency Aggregator	African	Sub	7094	C=0.8793	T=0.1207
Allele Frequency Aggregator	Latin American 2	Sub	6896	C=0.3982	T=0.6018
Allele Frequency Aggregator	Other	Sub	6608	C=0.4641	T=0.5359
Allele Frequency Aggregator	South Asian	Sub	5036	C=0.4498	T=0.5502
Allele Frequency Aggregator	Latin American 1	Sub	844	C=0.568	T=0.432
Allele Frequency Aggregator	Asian	Sub	702	C=0.392	T=0.608
gnomAD - Genomes	Global	Study-wide	139986	C=0.561792	T=0.438208
gnomAD - Genomes	European	Sub	75800	C=0.41441	T=0.58559
gnomAD - Genomes	African	Sub	41968	C=0.88329	T=0.11671
gnomAD - Genomes	American	Sub	13634	C=0.45937	T=0.54063
gnomAD - Genomes	Ashkenazi Jewish	Sub	3324	C=0.4332	T=0.5668
gnomAD - Genomes	East Asian	Sub	3114	C=0.4049	T=0.5951
gnomAD - Genomes	Other	Sub	2146	C=0.5578	T=0.4422
14KJPN	JAPANESE	Study-wide	28258	C=0.39100	T=0.60900
8.3KJPN	JAPANESE	Study-wide	16760	C=0.38658	T=0.61342
1000Genomes_30x	Global	Study-wide	6404	C=0.5829	T=0.4171
1000Genomes_30x	African	Sub	1786	C=0.9692	T=0.0308
1000Genomes_30x	Europe	Sub	1266	C=0.4439	T=0.5561
1000Genomes_30x	South Asian	Sub	1202	C=0.4276	T=0.5724
1000Genomes_30x	East Asian	Sub	1170	C=0.4205	T=0.5795
1000Genomes_30x	American	Sub	980	C=0.443	T=0.557
1000Genomes	Global	Study-wide	5008	C=0.5721	T=0.4279
1000Genomes	African	Sub	1322	C=0.9675	T=0.0325
1000Genomes	East Asian	Sub	1008	C=0.4187	T=0.5813
1000Genomes	Europe	Sub	1006	C=0.4384	T=0.5616
1000Genomes	South Asian	Sub	978	C=0.420	T=0.580
1000Genomes	American	Sub	694	C=0.450	T=0.550
Genetic variation in the Estonian population	Estonian	Study-wide	4480	C=0.3886	T=0.6114
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.4170	T=0.5830
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.4283	T=0.5717
KOREAN population from KRGDB	KOREAN	Study-wide	2928	C=0.4126	A=0.0000, G=0.0000, T=0.5874
HGDP-CEPH-db Supplement 1	Global	Study-wide	2084	C=0.4995	T=0.5005
HGDP-CEPH-db Supplement 1	Est_Asia	Sub	470	C=0.389	T=0.611
HGDP-CEPH-db Supplement 1	Central_South_Asia	Sub	414	C=0.481	T=0.519
HGDP-CEPH-db Supplement 1	Middle_Est	Sub	350	C=0.640	T=0.360
HGDP-CEPH-db Supplement 1	Europe	Sub	320	C=0.419	T=0.581
HGDP-CEPH-db Supplement 1	Africa	Sub	242	C=0.983	T=0.017
HGDP-CEPH-db Supplement 1	America	Sub	216	C=0.218	T=0.782
HGDP-CEPH-db Supplement 1	Oceania	Sub	72	C=0.22	T=0.78
HapMap	Global	Study-wide	1892	C=0.6385	T=0.3615
HapMap	American	Sub	770	C=0.478	T=0.522
HapMap	African	Sub	692	C=0.958	T=0.042
HapMap	Asian	Sub	254	C=0.386	T=0.614
HapMap	Europe	Sub	176	C=0.449	T=0.551
Korean Genome Project	KOREAN	Study-wide	1832	C=0.4143	T=0.5857
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	C=0.405	T=0.595
Northern Sweden	ACPOP	Study-wide	600	C=0.303	T=0.697
SGDP_PRJ	Global	Study-wide	414	C=0.290	T=0.710
Qatari	Global	Study-wide	216	C=0.708	T=0.292
A Vietnamese Genetic Variation Database	Global	Study-wide	214	C=0.519	T=0.481
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	80	C=0.60	T=0.40
Siberian	Global	Study-wide	54	C=0.22	T=0.78
The Danish reference pan genome	Danish	Study-wide	40	C=0.45	T=0.55

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 18	NC_000018.10:g.69958049C>A
GRCh38.p14 chr 18	NC_000018.10:g.69958049C>G
GRCh38.p14 chr 18	NC_000018.10:g.69958049C>T
GRCh37.p13 chr 18	NC_000018.9:g.67625285C>A
GRCh37.p13 chr 18	NC_000018.9:g.67625285C>G
GRCh37.p13 chr 18	NC_000018.9:g.67625285C>T

Gene: CD226, CD226 molecule (minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
CD226 transcript variant 2	NM_001303618.2:c.	N/A	Genic Upstream Transcript Variant
CD226 transcript variant 3	NM_001303619.2:c.	N/A	Genic Upstream Transcript Variant
CD226 transcript variant 1	NM_006566.4:c.	N/A	Genic Upstream Transcript Variant
CD226 transcript variant X5	XM_006722374.4:c.13+3543G… XM_006722374.4:c.13+3543G>T	N/A	Intron Variant
CD226 transcript variant X1	XM_005266642.4:c.	N/A	Genic Upstream Transcript Variant
CD226 transcript variant X2	XM_047437274.1:c.	N/A	Genic Upstream Transcript Variant
CD226 transcript variant X3	XM_047437275.1:c.	N/A	Genic Upstream Transcript Variant
CD226 transcript variant X4	XM_047437276.1:c.	N/A	Genic Upstream Transcript Variant
CD226 transcript variant X6	XM_047437277.1:c.	N/A	Genic Upstream Transcript Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	C=	A	G	T
GRCh38.p14 chr 18	NC_000018.10:g.69958049=	NC_000018.10:g.69958049C>A	NC_000018.10:g.69958049C>G	NC_000018.10:g.69958049C>T
GRCh37.p13 chr 18	NC_000018.9:g.67625285=	NC_000018.9:g.67625285C>A	NC_000018.9:g.67625285C>G	NC_000018.9:g.67625285C>T
CD226 transcript variant X5	XM_006722374.4:c.13+3543=	XM_006722374.4:c.13+3543G>T	XM_006722374.4:c.13+3543G>C	XM_006722374.4:c.13+3543G>A

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

121 SubSNP, 23 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	TSC-CSHL	ss2381652	Oct 23, 2000 (88)
2	WI_SSAHASNP	ss6759656	Feb 20, 2003 (111)
3	BCM_SSAHASNP	ss10887868	Jul 11, 2003 (116)
4	CSHL-HAPMAP	ss20054986	Feb 27, 2004 (120)
5	PERLEGEN	ss24511156	Sep 20, 2004 (123)
6	ABI	ss44120156	Mar 15, 2006 (126)
7	ILLUMINA	ss66608131	Dec 02, 2006 (127)
8	ILLUMINA	ss67128474	Dec 02, 2006 (127)
9	ILLUMINA	ss67467831	Dec 02, 2006 (127)
10	CSHL-HAPMAP	ss68424850	Jan 12, 2007 (127)
11	PERLEGEN	ss69218952	May 18, 2007 (127)
12	ILLUMINA	ss70441455	May 18, 2007 (127)
13	ILLUMINA	ss70630172	May 23, 2008 (130)
14	ILLUMINA	ss71180109	May 18, 2007 (127)
15	ILLUMINA	ss75483676	Dec 07, 2007 (129)
16	HGSV	ss83277029	Dec 14, 2007 (130)
17	KRIBB_YJKIM	ss83824169	Dec 14, 2007 (130)
18	BCMHGSC_JDW	ss90843456	Mar 24, 2008 (129)
19	HUMANGENOME_JCVI	ss96522141	Feb 04, 2009 (130)
20	BGI	ss103409383	Dec 01, 2009 (131)
21	1000GENOMES	ss110796758	Jan 25, 2009 (130)
22	ILLUMINA	ss120241278	Dec 01, 2009 (131)
23	ILLUMINA	ss121742269	Dec 01, 2009 (131)
24	ENSEMBL	ss132708207	Dec 01, 2009 (131)
25	ENSEMBL	ss137459051	Dec 01, 2009 (131)
26	ILLUMINA	ss153501575	Dec 01, 2009 (131)
27	GMI	ss155371536	Dec 01, 2009 (131)
28	ILLUMINA	ss159282362	Dec 01, 2009 (131)
29	ILLUMINA	ss160369255	Dec 01, 2009 (131)
30	ILLUMINA	ss170624793	Jul 04, 2010 (132)
31	ILLUMINA	ss172567557	Jul 04, 2010 (132)
32	BCM-HGSC-SUB	ss208190302	Jul 04, 2010 (132)
33	1000GENOMES	ss227950896	Jul 14, 2010 (132)
34	1000GENOMES	ss237533468	Jul 15, 2010 (132)
35	1000GENOMES	ss243769252	Jul 15, 2010 (132)
36	ILLUMINA	ss244260346	Jul 04, 2010 (132)
37	BL	ss255772539	May 09, 2011 (134)
38	GMI	ss283054346	May 04, 2012 (137)
39	GMI	ss287313633	Apr 25, 2013 (138)
40	PJP	ss292101294	May 09, 2011 (134)
41	ILLUMINA	ss480023209	May 04, 2012 (137)
42	ILLUMINA	ss480032001	May 04, 2012 (137)
43	ILLUMINA	ss480694464	Sep 08, 2015 (146)
44	ILLUMINA	ss484809785	May 04, 2012 (137)
45	ILLUMINA	ss536890203	Sep 08, 2015 (146)
46	SSMP	ss661584548	Apr 25, 2013 (138)
47	ILLUMINA	ss778812059	Sep 08, 2015 (146)
48	ILLUMINA	ss782851457	Sep 08, 2015 (146)
49	ILLUMINA	ss783815988	Sep 08, 2015 (146)
50	ILLUMINA	ss825410439	Apr 01, 2015 (144)
51	ILLUMINA	ss832105343	Sep 08, 2015 (146)
52	ILLUMINA	ss832794497	Jul 13, 2019 (153)
53	ILLUMINA	ss834272331	Sep 08, 2015 (146)
54	EVA-GONL	ss993902905	Aug 21, 2014 (142)
55	JMKIDD_LAB	ss1081632153	Aug 21, 2014 (142)
56	1000GENOMES	ss1361671088	Aug 21, 2014 (142)
57	DDI	ss1428274147	Apr 01, 2015 (144)
58	EVA_GENOME_DK	ss1578477161	Apr 01, 2015 (144)
59	EVA_UK10K_ALSPAC	ss1637226197	Apr 01, 2015 (144)
60	EVA_UK10K_TWINSUK	ss1680220230	Apr 01, 2015 (144)
61	EVA_DECODE	ss1697966377	Apr 01, 2015 (144)
62	EVA_SVP	ss1713638995	Apr 01, 2015 (144)
63	ILLUMINA	ss1752265845	Sep 08, 2015 (146)
64	WEILL_CORNELL_DGM	ss1937371110	Feb 12, 2016 (147)
65	GENOMED	ss1968566543	Jul 19, 2016 (147)
66	JJLAB	ss2029459686	Sep 14, 2016 (149)
67	USC_VALOUEV	ss2157967043	Dec 20, 2016 (150)
68	HUMAN_LONGEVITY	ss2222909629	Dec 20, 2016 (150)
69	SYSTEMSBIOZJU	ss2629228632	Nov 08, 2017 (151)
70	ILLUMINA	ss2633494031	Nov 08, 2017 (151)
71	GRF	ss2702562900	Nov 08, 2017 (151)
72	GNOMAD	ss2958494802	Nov 08, 2017 (151)
73	SWEGEN	ss3016790574	Nov 08, 2017 (151)
74	BIOINF_KMB_FNS_UNIBA	ss3028560190	Nov 08, 2017 (151)
75	CSHL	ss3352102671	Nov 08, 2017 (151)
76	ILLUMINA	ss3627846581	Oct 12, 2018 (152)
77	ILLUMINA	ss3631469667	Oct 12, 2018 (152)
78	ILLUMINA	ss3633168640	Oct 12, 2018 (152)
79	ILLUMINA	ss3633877657	Oct 12, 2018 (152)
80	ILLUMINA	ss3634713289	Oct 12, 2018 (152)
81	ILLUMINA	ss3635564813	Oct 12, 2018 (152)
82	ILLUMINA	ss3636403818	Oct 12, 2018 (152)
83	ILLUMINA	ss3637316465	Oct 12, 2018 (152)
84	ILLUMINA	ss3638205333	Oct 12, 2018 (152)
85	ILLUMINA	ss3639111267	Oct 12, 2018 (152)
86	ILLUMINA	ss3639564960	Oct 12, 2018 (152)
87	ILLUMINA	ss3640420597	Oct 12, 2018 (152)
88	ILLUMINA	ss3643180383	Oct 12, 2018 (152)
89	URBANLAB	ss3650827317	Oct 12, 2018 (152)
90	EGCUT_WGS	ss3683642995	Jul 13, 2019 (153)
91	EVA_DECODE	ss3701981874	Jul 13, 2019 (153)
92	ACPOP	ss3742691870	Jul 13, 2019 (153)
93	ILLUMINA	ss3745013398	Jul 13, 2019 (153)
94	EVA	ss3755593297	Jul 13, 2019 (153)
95	ILLUMINA	ss3772510851	Jul 13, 2019 (153)
96	KHV_HUMAN_GENOMES	ss3820850320	Jul 13, 2019 (153)
97	EVA	ss3835255563	Apr 27, 2020 (154)
98	EVA	ss3841247904	Apr 27, 2020 (154)
99	EVA	ss3846750914	Apr 27, 2020 (154)
100	HGDP	ss3847589559	Apr 27, 2020 (154)
101	SGDP_PRJ	ss3887359380	Apr 27, 2020 (154)
102	KRGDB	ss3937259221	Apr 27, 2020 (154)
103	KOGIC	ss3980455266	Apr 27, 2020 (154)
104	EVA	ss3985836760	Apr 27, 2021 (155)
105	EVA	ss4017806818	Apr 27, 2021 (155)
106	TOPMED	ss5062355718	Apr 27, 2021 (155)
107	TOMMO_GENOMICS	ss5225891567	Apr 27, 2021 (155)
108	1000G_HIGH_COVERAGE	ss5305858024	Oct 16, 2022 (156)
109	GENOGRAPHIC	ss5314576856	Oct 16, 2022 (156)
110	EVA	ss5315946227	Oct 16, 2022 (156)
111	EVA	ss5432457518	Oct 16, 2022 (156)
112	HUGCELL_USP	ss5498575355	Oct 16, 2022 (156)
113	1000G_HIGH_COVERAGE	ss5610992535	Oct 16, 2022 (156)
114	SANFORD_IMAGENETICS	ss5661621993	Oct 16, 2022 (156)
115	TOMMO_GENOMICS	ss5783888147	Oct 16, 2022 (156)
116	YY_MCH	ss5817242617	Oct 16, 2022 (156)
117	EVA	ss5827771539	Oct 16, 2022 (156)
118	EVA	ss5852127779	Oct 16, 2022 (156)
119	EVA	ss5874738416	Oct 16, 2022 (156)
120	EVA	ss5953052794	Oct 16, 2022 (156)
121	EVA	ss5981015568	Oct 16, 2022 (156)
122	1000Genomes	NC_000018.9 - 67625285	Oct 12, 2018 (152)
123	1000Genomes_30x	NC_000018.10 - 69958049	Oct 16, 2022 (156)
124	The Avon Longitudinal Study of Parents and Children	NC_000018.9 - 67625285	Oct 12, 2018 (152)
125	Genetic variation in the Estonian population	NC_000018.9 - 67625285	Oct 12, 2018 (152)
126	Genographic Project	NC_000018.10 - 69958049	Oct 16, 2022 (156)
127	The Danish reference pan genome	NC_000018.9 - 67625285	Apr 27, 2020 (154)
128	gnomAD - Genomes	NC_000018.10 - 69958049	Apr 27, 2021 (155)
129	Genome of the Netherlands Release 5	NC_000018.9 - 67625285	Apr 27, 2020 (154)
130	HGDP-CEPH-db Supplement 1	NC_000018.8 - 65776265	Apr 27, 2020 (154)
131	HapMap	NC_000018.10 - 69958049	Apr 27, 2020 (154)
132	KOREAN population from KRGDB	NC_000018.9 - 67625285	Apr 27, 2020 (154)
133	Korean Genome Project	NC_000018.10 - 69958049	Apr 27, 2020 (154)
134	Northern Sweden	NC_000018.9 - 67625285	Jul 13, 2019 (153)
135	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000018.9 - 67625285	Apr 27, 2021 (155)
136	Qatari	NC_000018.9 - 67625285	Apr 27, 2020 (154)
137	SGDP_PRJ	NC_000018.9 - 67625285	Apr 27, 2020 (154)
138	Siberian	NC_000018.9 - 67625285	Apr 27, 2020 (154)
139	8.3KJPN	NC_000018.9 - 67625285	Apr 27, 2021 (155)
140	14KJPN	NC_000018.10 - 69958049	Oct 16, 2022 (156)
141	TopMed	NC_000018.10 - 69958049	Apr 27, 2021 (155)
142	UK 10K study - Twins	NC_000018.9 - 67625285	Oct 12, 2018 (152)
143	A Vietnamese Genetic Variation Database	NC_000018.9 - 67625285	Jul 13, 2019 (153)
144	ALFA	NC_000018.10 - 69958049	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs17804614	Oct 08, 2004 (123)
rs57607601	May 23, 2008 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
44436615, ss3937259221	NC_000018.9:67625284:C:A	NC_000018.10:69958048:C:A	(self)
44436615, ss3937259221	NC_000018.9:67625284:C:G	NC_000018.10:69958048:C:G	(self)
267451, ss83277029, ss90843456, ss110796758, ss208190302, ss255772539, ss283054346, ss287313633, ss292101294, ss480023209, ss825410439, ss1697966377, ss1713638995, ss3639111267, ss3639564960, ss3643180383, ss3847589559	NC_000018.8:65776264:C:T	NC_000018.10:69958048:C:T	(self)
75023951, 41584915, 29381243, 4666149, 18526613, 44436615, 15976735, 1062687, 19413032, 39376360, 10483397, 83860874, 41584915, 9192045, ss227950896, ss237533468, ss243769252, ss480032001, ss480694464, ss484809785, ss536890203, ss661584548, ss778812059, ss782851457, ss783815988, ss832105343, ss832794497, ss834272331, ss993902905, ss1081632153, ss1361671088, ss1428274147, ss1578477161, ss1637226197, ss1680220230, ss1752265845, ss1937371110, ss1968566543, ss2029459686, ss2157967043, ss2629228632, ss2633494031, ss2702562900, ss2958494802, ss3016790574, ss3352102671, ss3627846581, ss3631469667, ss3633168640, ss3633877657, ss3634713289, ss3635564813, ss3636403818, ss3637316465, ss3638205333, ss3640420597, ss3683642995, ss3742691870, ss3745013398, ss3755593297, ss3772510851, ss3835255563, ss3841247904, ss3887359380, ss3937259221, ss3985836760, ss4017806818, ss5225891567, ss5315946227, ss5432457518, ss5661621993, ss5827771539, ss5953052794, ss5981015568	NC_000018.9:67625284:C:T	NC_000018.10:69958048:C:T	(self)
98518470, 103855, 529177367, 1638588, 36833267, 117725251, 277901381, 226069526, ss2222909629, ss3028560190, ss3650827317, ss3701981874, ss3820850320, ss3846750914, ss3980455266, ss5062355718, ss5305858024, ss5314576856, ss5498575355, ss5610992535, ss5783888147, ss5817242617, ss5852127779, ss5874738416	NC_000018.10:69958048:C:T	NC_000018.10:69958048:C:T	(self)
ss10887868, ss20054986	NT_025028.13:15416130:C:T	NC_000018.10:69958048:C:T	(self)
ss2381652, ss6759656, ss24511156, ss44120156, ss66608131, ss67128474, ss67467831, ss68424850, ss69218952, ss70441455, ss70630172, ss71180109, ss75483676, ss83824169, ss96522141, ss103409383, ss120241278, ss121742269, ss132708207, ss137459051, ss153501575, ss155371536, ss159282362, ss160369255, ss170624793, ss172567557, ss244260346	NT_025028.14:15416148:C:T	NC_000018.10:69958048:C:T	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

1 citation for rs1539964

PMID	Title	Author	Year	Journal
19223858	Genomewide linkage scan of schizophrenia in a large multicenter pedigree sample using single nucleotide polymorphisms.	Holmans PA et al.	2009	Molecular psychiatry

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
Top▲ Help
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

Choose placement

dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs1539964