Name: rs11208923
Published: September 21, 2022
License: Open Access

Welcome to the Reference SNP (rs) Report

All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.

Reference SNP (rs) Report

This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.

rs11208923

Current Build 156

Released September 21, 2022

Organism: Homo sapiens
Position: chr1:66616759 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
Alleles: A>G
Variation Type: SNV Single Nucleotide Variation
Frequency: G=0.144834 (38336/264690, TOPMED)
G=0.133782 (18756/140198, GnomAD)
G=0.13621 (3880/28486, ALFA) (+ 19 more)
G=0.45371 (12821/28258, 14KJPN)
G=0.45937 (7699/16760, 8.3KJPN)
G=0.2325 (1489/6404, 1000G_30x)
G=0.2426 (1215/5008, 1000G)
G=0.1315 (589/4480, Estonian)
G=0.1238 (477/3854, ALSPAC)
G=0.1284 (476/3708, TWINSUK)
G=0.4437 (1300/2930, KOREAN)
G=0.2172 (411/1892, HapMap)
G=0.4563 (836/1832, Korea1K)
G=0.143 (143/998, GoNL)
G=0.224 (140/626, Chileans)
G=0.162 (97/600, NorthernSweden)
A=0.342 (91/266, SGDP_PRJ)
G=0.287 (62/216, Qatari)
G=0.463 (100/216, Vietnamese)
G=0.05 (2/40, GENOME_DK)
G=0.06 (2/36, Ancient Sardinia)
A=0.43 (6/14, Siberian)

Clinical Significance: Not Reported in ClinVar
Gene : Consequence: SGIP1 : Intron Variant
Publications: 0 citations
Genomic View: See rs on genome

ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.

Release Version: 20231103111315

Population	Group	Sample Size	Ref Allele	Alt Allele
Total	Global	28486	A=0.86379	G=0.13621
European	Sub	17482	A=0.86792	G=0.13208
African	Sub	6258	A=0.9086	G=0.0914
African Others	Sub	210	A=0.948	G=0.052
African American	Sub	6048	A=0.9072	G=0.0928
Asian	Sub	160	A=0.463	G=0.537
East Asian	Sub	104	A=0.481	G=0.519
Other Asian	Sub	56	A=0.43	G=0.57
Latin American 1	Sub	292	A=0.812	G=0.188
Latin American 2	Sub	2770	A=0.7975	G=0.2025
South Asian	Sub	112	A=0.643	G=0.357
Other	Sub	1412	A=0.8180	G=0.1820

Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").

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Study	Population	Group	Sample Size	Ref Allele	Alt Allele
TopMed	Global	Study-wide	264690	A=0.855166	G=0.144834
gnomAD - Genomes	Global	Study-wide	140198	A=0.866218	G=0.133782
gnomAD - Genomes	European	Sub	75934	A=0.86723	G=0.13277
gnomAD - Genomes	African	Sub	42022	A=0.91300	G=0.08700
gnomAD - Genomes	American	Sub	13652	A=0.81109	G=0.18891
gnomAD - Genomes	Ashkenazi Jewish	Sub	3318	A=0.8044	G=0.1956
gnomAD - Genomes	East Asian	Sub	3122	A=0.5372	G=0.4628
gnomAD - Genomes	Other	Sub	2150	A=0.8395	G=0.1605
Allele Frequency Aggregator	Total	Global	28486	A=0.86379	G=0.13621
Allele Frequency Aggregator	European	Sub	17482	A=0.86792	G=0.13208
Allele Frequency Aggregator	African	Sub	6258	A=0.9086	G=0.0914
Allele Frequency Aggregator	Latin American 2	Sub	2770	A=0.7975	G=0.2025
Allele Frequency Aggregator	Other	Sub	1412	A=0.8180	G=0.1820
Allele Frequency Aggregator	Latin American 1	Sub	292	A=0.812	G=0.188
Allele Frequency Aggregator	Asian	Sub	160	A=0.463	G=0.537
Allele Frequency Aggregator	South Asian	Sub	112	A=0.643	G=0.357
14KJPN	JAPANESE	Study-wide	28258	A=0.54629	G=0.45371
8.3KJPN	JAPANESE	Study-wide	16760	A=0.54063	G=0.45937
1000Genomes_30x	Global	Study-wide	6404	A=0.7675	G=0.2325
1000Genomes_30x	African	Sub	1786	A=0.9311	G=0.0689
1000Genomes_30x	Europe	Sub	1266	A=0.8807	G=0.1193
1000Genomes_30x	South Asian	Sub	1202	A=0.5815	G=0.4185
1000Genomes_30x	East Asian	Sub	1170	A=0.5547	G=0.4453
1000Genomes_30x	American	Sub	980	A=0.805	G=0.195
1000Genomes	Global	Study-wide	5008	A=0.7574	G=0.2426
1000Genomes	African	Sub	1322	A=0.9319	G=0.0681
1000Genomes	East Asian	Sub	1008	A=0.5506	G=0.4494
1000Genomes	Europe	Sub	1006	A=0.8797	G=0.1203
1000Genomes	South Asian	Sub	978	A=0.577	G=0.423
1000Genomes	American	Sub	694	A=0.803	G=0.197
Genetic variation in the Estonian population	Estonian	Study-wide	4480	A=0.8685	G=0.1315
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.8762	G=0.1238
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.8716	G=0.1284
KOREAN population from KRGDB	KOREAN	Study-wide	2930	A=0.5563	G=0.4437
HapMap	Global	Study-wide	1892	A=0.7828	G=0.2172
HapMap	American	Sub	770	A=0.730	G=0.270
HapMap	African	Sub	692	A=0.905	G=0.095
HapMap	Asian	Sub	254	A=0.547	G=0.453
HapMap	Europe	Sub	176	A=0.875	G=0.125
Korean Genome Project	KOREAN	Study-wide	1832	A=0.5437	G=0.4563
Genome of the Netherlands Release 5	Genome of the Netherlands	Study-wide	998	A=0.857	G=0.143
Chileans	Chilean	Study-wide	626	A=0.776	G=0.224
Northern Sweden	ACPOP	Study-wide	600	A=0.838	G=0.162
SGDP_PRJ	Global	Study-wide	266	A=0.342	G=0.658
Qatari	Global	Study-wide	216	A=0.713	G=0.287
A Vietnamese Genetic Variation Database	Global	Study-wide	216	A=0.537	G=0.463
The Danish reference pan genome	Danish	Study-wide	40	A=0.95	G=0.05
Ancient Sardinia genome-wide 1240k capture data generation and analysis	Global	Study-wide	36	A=0.94	G=0.06
Siberian	Global	Study-wide	14	A=0.43	G=0.57

Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.

Genomic Placements

Sequence name	Change
GRCh38.p14 chr 1	NC_000001.11:g.66616759A>G
GRCh37.p13 chr 1	NC_000001.10:g.67082442A>G

Gene: SGIP1, SH3GL interacting endocytic adaptor 1 (plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
SGIP1 transcript variant 2	NM_001308203.2:c.11-9088A… NM_001308203.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 3	NM_001350217.2:c.11-9088A… NM_001350217.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 4	NM_001350218.2:c.11-9088A… NM_001350218.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 5	NM_001376534.1:c.11-9088A… NM_001376534.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 6	NM_001376535.1:c.11-9088A… NM_001376535.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 7	NM_001376536.1:c.11-9088A… NM_001376536.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 8	NM_001376537.1:c.11-9088A… NM_001376537.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 9	NM_001376538.1:c.11-9088A… NM_001376538.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 10	NM_001376539.1:c.11-9088A… NM_001376539.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 11	NM_001376540.1:c.11-9088A… NM_001376540.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 12	NM_001376541.1:c.11-9088A… NM_001376541.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 13	NM_001376542.1:c.11-9088A… NM_001376542.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 14	NM_001376543.1:c.11-9088A… NM_001376543.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 15	NM_001376544.1:c.11-9088A… NM_001376544.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 16	NM_001376545.1:c.11-9088A… NM_001376545.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 17	NM_001376546.1:c.11-9088A… NM_001376546.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 18	NM_001376547.1:c.11-9088A… NM_001376547.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 19	NM_001376548.1:c.11-9088A… NM_001376548.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 20	NM_001376549.1:c.11-9088A… NM_001376549.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 21	NM_001376550.1:c.11-9088A… NM_001376550.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 22	NM_001376551.1:c.11-9088A… NM_001376551.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 23	NM_001376552.1:c.11-9088A… NM_001376552.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 24	NM_001376554.1:c.11-9088A… NM_001376554.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 25	NM_001376555.1:c.11-9088A… NM_001376555.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 26	NM_001376556.1:c.11-9088A… NM_001376556.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 27	NM_001376557.1:c.11-9088A… NM_001376557.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant 1	NM_032291.4:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X26	XM_005271270.5:c.11-9088A… XM_005271270.5:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X6	XM_006710961.3:c.11-9088A… XM_006710961.3:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X12	XM_006710971.3:c.11-9088A… XM_006710971.3:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X14	XM_006710973.3:c.11-9088A… XM_006710973.3:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X13	XM_011542291.2:c.11-9088A… XM_011542291.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X21	XM_011542292.2:c.11-9088A… XM_011542292.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X1	XM_017002505.2:c.11-9088A… XM_017002505.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X2	XM_017002506.2:c.11-9088A… XM_017002506.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X3	XM_017002507.2:c.11-9088A… XM_017002507.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X4	XM_017002508.2:c.11-9088A… XM_017002508.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X5	XM_017002510.2:c.11-9088A… XM_017002510.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X9	XM_017002515.2:c.11-9088A… XM_017002515.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X10	XM_017002516.2:c.11-9088A… XM_017002516.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X11	XM_017002524.2:c.11-9088A… XM_017002524.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X19	XM_017002528.2:c.11-9088A… XM_017002528.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X20	XM_017002529.2:c.11-9088A… XM_017002529.2:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X7	XM_047432051.1:c.11-9088A… XM_047432051.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X8	XM_047432052.1:c.11-9088A… XM_047432052.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X15	XM_047432053.1:c.11-9088A… XM_047432053.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X16	XM_047432054.1:c.11-9088A… XM_047432054.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X17	XM_047432055.1:c.11-9088A… XM_047432055.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X18	XM_047432056.1:c.11-9088A… XM_047432056.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X22	XM_047432057.1:c.11-9088A… XM_047432057.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X23	XM_047432058.1:c.11-9088A… XM_047432058.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X24	XM_047432059.1:c.11-9088A… XM_047432059.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X25	XM_047432060.1:c.11-9088A… XM_047432060.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X28	XM_047432061.1:c.11-9088A… XM_047432061.1:c.11-9088A>G	N/A	Intron Variant
SGIP1 transcript variant X27	XR_007064415.1:n.	N/A	Intron Variant

Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.

Not Reported in ClinVar

Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".

Placement	A=	G
GRCh38.p14 chr 1	NC_000001.11:g.66616759=	NC_000001.11:g.66616759A>G
GRCh37.p13 chr 1	NC_000001.10:g.67082442=	NC_000001.10:g.67082442A>G
SGIP1 transcript variant 2	NM_001308203.2:c.11-9088=	NM_001308203.2:c.11-9088A>G
SGIP1 transcript variant 3	NM_001350217.2:c.11-9088=	NM_001350217.2:c.11-9088A>G
SGIP1 transcript variant 4	NM_001350218.2:c.11-9088=	NM_001350218.2:c.11-9088A>G
SGIP1 transcript variant 5	NM_001376534.1:c.11-9088=	NM_001376534.1:c.11-9088A>G
SGIP1 transcript variant 6	NM_001376535.1:c.11-9088=	NM_001376535.1:c.11-9088A>G
SGIP1 transcript variant 7	NM_001376536.1:c.11-9088=	NM_001376536.1:c.11-9088A>G
SGIP1 transcript variant 8	NM_001376537.1:c.11-9088=	NM_001376537.1:c.11-9088A>G
SGIP1 transcript variant 9	NM_001376538.1:c.11-9088=	NM_001376538.1:c.11-9088A>G
SGIP1 transcript variant 10	NM_001376539.1:c.11-9088=	NM_001376539.1:c.11-9088A>G
SGIP1 transcript variant 11	NM_001376540.1:c.11-9088=	NM_001376540.1:c.11-9088A>G
SGIP1 transcript variant 12	NM_001376541.1:c.11-9088=	NM_001376541.1:c.11-9088A>G
SGIP1 transcript variant 13	NM_001376542.1:c.11-9088=	NM_001376542.1:c.11-9088A>G
SGIP1 transcript variant 14	NM_001376543.1:c.11-9088=	NM_001376543.1:c.11-9088A>G
SGIP1 transcript variant 15	NM_001376544.1:c.11-9088=	NM_001376544.1:c.11-9088A>G
SGIP1 transcript variant 16	NM_001376545.1:c.11-9088=	NM_001376545.1:c.11-9088A>G
SGIP1 transcript variant 17	NM_001376546.1:c.11-9088=	NM_001376546.1:c.11-9088A>G
SGIP1 transcript variant 18	NM_001376547.1:c.11-9088=	NM_001376547.1:c.11-9088A>G
SGIP1 transcript variant 19	NM_001376548.1:c.11-9088=	NM_001376548.1:c.11-9088A>G
SGIP1 transcript variant 20	NM_001376549.1:c.11-9088=	NM_001376549.1:c.11-9088A>G
SGIP1 transcript variant 21	NM_001376550.1:c.11-9088=	NM_001376550.1:c.11-9088A>G
SGIP1 transcript variant 22	NM_001376551.1:c.11-9088=	NM_001376551.1:c.11-9088A>G
SGIP1 transcript variant 23	NM_001376552.1:c.11-9088=	NM_001376552.1:c.11-9088A>G
SGIP1 transcript variant 24	NM_001376554.1:c.11-9088=	NM_001376554.1:c.11-9088A>G
SGIP1 transcript variant 25	NM_001376555.1:c.11-9088=	NM_001376555.1:c.11-9088A>G
SGIP1 transcript variant 26	NM_001376556.1:c.11-9088=	NM_001376556.1:c.11-9088A>G
SGIP1 transcript variant 27	NM_001376557.1:c.11-9088=	NM_001376557.1:c.11-9088A>G
SGIP1 transcript	NM_032291.2:c.11-9088=	NM_032291.2:c.11-9088A>G
SGIP1 transcript variant 1	NM_032291.4:c.11-9088=	NM_032291.4:c.11-9088A>G
SGIP1 transcript variant X1	XM_005271262.1:c.11-9088=	XM_005271262.1:c.11-9088A>G
SGIP1 transcript variant X2	XM_005271263.1:c.11-9088=	XM_005271263.1:c.11-9088A>G
SGIP1 transcript variant X3	XM_005271264.1:c.11-9088=	XM_005271264.1:c.11-9088A>G
SGIP1 transcript variant X4	XM_005271265.1:c.11-9088=	XM_005271265.1:c.11-9088A>G
SGIP1 transcript variant X5	XM_005271266.1:c.11-9088=	XM_005271266.1:c.11-9088A>G
SGIP1 transcript variant X6	XM_005271267.1:c.11-9088=	XM_005271267.1:c.11-9088A>G
SGIP1 transcript variant X7	XM_005271268.1:c.11-9088=	XM_005271268.1:c.11-9088A>G
SGIP1 transcript variant X8	XM_005271269.1:c.11-9088=	XM_005271269.1:c.11-9088A>G
SGIP1 transcript variant X9	XM_005271270.1:c.11-9088=	XM_005271270.1:c.11-9088A>G
SGIP1 transcript variant X26	XM_005271270.5:c.11-9088=	XM_005271270.5:c.11-9088A>G
SGIP1 transcript variant X10	XM_005271271.1:c.11-9088=	XM_005271271.1:c.11-9088A>G
SGIP1 transcript variant X6	XM_006710961.3:c.11-9088=	XM_006710961.3:c.11-9088A>G
SGIP1 transcript variant X12	XM_006710971.3:c.11-9088=	XM_006710971.3:c.11-9088A>G
SGIP1 transcript variant X14	XM_006710973.3:c.11-9088=	XM_006710973.3:c.11-9088A>G
SGIP1 transcript variant X13	XM_011542291.2:c.11-9088=	XM_011542291.2:c.11-9088A>G
SGIP1 transcript variant X21	XM_011542292.2:c.11-9088=	XM_011542292.2:c.11-9088A>G
SGIP1 transcript variant X1	XM_017002505.2:c.11-9088=	XM_017002505.2:c.11-9088A>G
SGIP1 transcript variant X2	XM_017002506.2:c.11-9088=	XM_017002506.2:c.11-9088A>G
SGIP1 transcript variant X3	XM_017002507.2:c.11-9088=	XM_017002507.2:c.11-9088A>G
SGIP1 transcript variant X4	XM_017002508.2:c.11-9088=	XM_017002508.2:c.11-9088A>G
SGIP1 transcript variant X5	XM_017002510.2:c.11-9088=	XM_017002510.2:c.11-9088A>G
SGIP1 transcript variant X9	XM_017002515.2:c.11-9088=	XM_017002515.2:c.11-9088A>G
SGIP1 transcript variant X10	XM_017002516.2:c.11-9088=	XM_017002516.2:c.11-9088A>G
SGIP1 transcript variant X11	XM_017002524.2:c.11-9088=	XM_017002524.2:c.11-9088A>G
SGIP1 transcript variant X19	XM_017002528.2:c.11-9088=	XM_017002528.2:c.11-9088A>G
SGIP1 transcript variant X20	XM_017002529.2:c.11-9088=	XM_017002529.2:c.11-9088A>G
SGIP1 transcript variant X7	XM_047432051.1:c.11-9088=	XM_047432051.1:c.11-9088A>G
SGIP1 transcript variant X8	XM_047432052.1:c.11-9088=	XM_047432052.1:c.11-9088A>G
SGIP1 transcript variant X15	XM_047432053.1:c.11-9088=	XM_047432053.1:c.11-9088A>G
SGIP1 transcript variant X16	XM_047432054.1:c.11-9088=	XM_047432054.1:c.11-9088A>G
SGIP1 transcript variant X17	XM_047432055.1:c.11-9088=	XM_047432055.1:c.11-9088A>G
SGIP1 transcript variant X18	XM_047432056.1:c.11-9088=	XM_047432056.1:c.11-9088A>G
SGIP1 transcript variant X22	XM_047432057.1:c.11-9088=	XM_047432057.1:c.11-9088A>G
SGIP1 transcript variant X23	XM_047432058.1:c.11-9088=	XM_047432058.1:c.11-9088A>G
SGIP1 transcript variant X24	XM_047432059.1:c.11-9088=	XM_047432059.1:c.11-9088A>G
SGIP1 transcript variant X25	XM_047432060.1:c.11-9088=	XM_047432060.1:c.11-9088A>G
SGIP1 transcript variant X28	XM_047432061.1:c.11-9088=	XM_047432061.1:c.11-9088A>G

Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.

68 SubSNP, 22 Frequency submissions

No	Submitter	Submission ID	Date (Build)
1	SC_SNP	ss18075344	Feb 27, 2004 (120)
2	SC_SNP	ss18248902	Feb 27, 2004 (120)
3	SSAHASNP	ss20507353	Apr 05, 2004 (121)
4	PERLEGEN	ss23848051	Sep 20, 2004 (123)
5	ABI	ss41174632	Mar 15, 2006 (126)
6	AFFY	ss66082248	Nov 29, 2006 (127)
7	AFFY	ss76024993	Dec 06, 2007 (129)
8	KRIBB_YJKIM	ss82874819	Dec 14, 2007 (130)
9	HUMANGENOME_JCVI	ss99214583	Feb 06, 2009 (130)
10	1000GENOMES	ss108272526	Jan 23, 2009 (130)
11	ENSEMBL	ss131806786	Dec 01, 2009 (131)
12	GMI	ss155117330	Dec 01, 2009 (131)
13	COMPLETE_GENOMICS	ss164462849	Jul 04, 2010 (132)
14	AFFY	ss170558161	Jul 04, 2010 (132)
15	BUSHMAN	ss198563690	Jul 04, 2010 (132)
16	1000GENOMES	ss230567570	Jul 14, 2010 (132)
17	1000GENOMES	ss238255892	Jul 15, 2010 (132)
18	GMI	ss275858921	May 04, 2012 (137)
19	PJP	ss290528352	May 09, 2011 (134)
20	TISHKOFF	ss554205219	Apr 25, 2013 (138)
21	SSMP	ss648077049	Apr 25, 2013 (138)
22	EVA-GONL	ss975245229	Aug 21, 2014 (142)
23	JMKIDD_LAB	ss1067952505	Aug 21, 2014 (142)
24	1000GENOMES	ss1291214905	Aug 21, 2014 (142)
25	EVA_GENOME_DK	ss1574119303	Apr 01, 2015 (144)
26	EVA_DECODE	ss1584614662	Apr 01, 2015 (144)
27	EVA_UK10K_ALSPAC	ss1600345980	Apr 01, 2015 (144)
28	EVA_UK10K_TWINSUK	ss1643340013	Apr 01, 2015 (144)
29	EVA_SVP	ss1712340076	Apr 01, 2015 (144)
30	WEILL_CORNELL_DGM	ss1918453115	Feb 12, 2016 (147)
31	GENOMED	ss1966766068	Jul 19, 2016 (147)
32	JJLAB	ss2019743918	Sep 14, 2016 (149)
33	USC_VALOUEV	ss2147759682	Dec 20, 2016 (150)
34	HUMAN_LONGEVITY	ss2163176354	Dec 20, 2016 (150)
35	SYSTEMSBIOZJU	ss2624385575	Nov 08, 2017 (151)
36	GRF	ss2697677135	Nov 08, 2017 (151)
37	GNOMAD	ss2756057035	Nov 08, 2017 (151)
38	SWEGEN	ss2986946087	Nov 08, 2017 (151)
39	BIOINF_KMB_FNS_UNIBA	ss3023633621	Nov 08, 2017 (151)
40	CSHL	ss3343492038	Nov 08, 2017 (151)
41	URBANLAB	ss3646680823	Oct 11, 2018 (152)
42	EGCUT_WGS	ss3655016048	Jul 12, 2019 (153)
43	EVA_DECODE	ss3686930565	Jul 12, 2019 (153)
44	ACPOP	ss3727117903	Jul 12, 2019 (153)
45	EVA	ss3746304584	Jul 12, 2019 (153)
46	PACBIO	ss3783432479	Jul 12, 2019 (153)
47	PACBIO	ss3789087166	Jul 12, 2019 (153)
48	PACBIO	ss3793959947	Jul 12, 2019 (153)
49	KHV_HUMAN_GENOMES	ss3799311209	Jul 12, 2019 (153)
50	EVA	ss3826213811	Apr 25, 2020 (154)
51	SGDP_PRJ	ss3849015944	Apr 25, 2020 (154)
52	KRGDB	ss3894043203	Apr 25, 2020 (154)
53	KOGIC	ss3944670143	Apr 25, 2020 (154)
54	EVA	ss3984802081	Apr 27, 2021 (155)
55	TOPMED	ss4452577187	Apr 27, 2021 (155)
56	TOMMO_GENOMICS	ss5144310919	Apr 27, 2021 (155)
57	1000G_HIGH_COVERAGE	ss5242548907	Oct 17, 2022 (156)
58	EVA	ss5319242374	Oct 17, 2022 (156)
59	HUGCELL_USP	ss5443583939	Oct 17, 2022 (156)
60	EVA	ss5505879263	Oct 17, 2022 (156)
61	1000G_HIGH_COVERAGE	ss5514966270	Oct 17, 2022 (156)
62	SANFORD_IMAGENETICS	ss5625689401	Oct 17, 2022 (156)
63	TOMMO_GENOMICS	ss5669186242	Oct 17, 2022 (156)
64	YY_MCH	ss5800666896	Oct 17, 2022 (156)
65	EVA	ss5832068337	Oct 17, 2022 (156)
66	EVA	ss5848941009	Oct 17, 2022 (156)
67	EVA	ss5908583871	Oct 17, 2022 (156)
68	EVA	ss5937528023	Oct 17, 2022 (156)
69	1000Genomes	NC_000001.10 - 67082442	Oct 11, 2018 (152)
70	1000Genomes_30x	NC_000001.11 - 66616759	Oct 17, 2022 (156)
71	The Avon Longitudinal Study of Parents and Children	NC_000001.10 - 67082442	Oct 11, 2018 (152)
72	Chileans	NC_000001.10 - 67082442	Apr 25, 2020 (154)
73	Genetic variation in the Estonian population	NC_000001.10 - 67082442	Oct 11, 2018 (152)
74	The Danish reference pan genome	NC_000001.10 - 67082442	Apr 25, 2020 (154)
75	gnomAD - Genomes	NC_000001.11 - 66616759	Apr 27, 2021 (155)
76	Genome of the Netherlands Release 5	NC_000001.10 - 67082442	Apr 25, 2020 (154)
77	HapMap	NC_000001.11 - 66616759	Apr 25, 2020 (154)
78	KOREAN population from KRGDB	NC_000001.10 - 67082442	Apr 25, 2020 (154)
79	Korean Genome Project	NC_000001.11 - 66616759	Apr 25, 2020 (154)
80	Northern Sweden	NC_000001.10 - 67082442	Jul 12, 2019 (153)
81	Ancient Sardinia genome-wide 1240k capture data generation and analysis	NC_000001.10 - 67082442	Apr 27, 2021 (155)
82	Qatari	NC_000001.10 - 67082442	Apr 25, 2020 (154)
83	SGDP_PRJ	NC_000001.10 - 67082442	Apr 25, 2020 (154)
84	Siberian	NC_000001.10 - 67082442	Apr 25, 2020 (154)
85	8.3KJPN	NC_000001.10 - 67082442	Apr 27, 2021 (155)
86	14KJPN	NC_000001.11 - 66616759	Oct 17, 2022 (156)
87	TopMed	NC_000001.11 - 66616759	Apr 27, 2021 (155)
88	UK 10K study - Twins	NC_000001.10 - 67082442	Oct 11, 2018 (152)
89	A Vietnamese Genetic Variation Database	NC_000001.10 - 67082442	Jul 12, 2019 (153)
90	ALFA	NC_000001.11 - 66616759	Apr 27, 2021 (155)

History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).

Associated ID	History Updated (Build)
rs57351055	Feb 27, 2009 (130)

Added to this RefSNP Cluster:

Submission IDs	Observation SPDI	Canonical SPDI	Source RSIDs
ss108272526, ss164462849, ss198563690, ss275858921, ss290528352, ss1584614662, ss1712340076	NC_000001.9:66855029:A:G	NC_000001.11:66616758:A:G	(self)
1944739, 1065398, 10917, 754296, 1535482, 454770, 1220597, 402768, 28008, 495045, 1032924, 276036, 2280226, 1065398, 222980, ss230567570, ss238255892, ss554205219, ss648077049, ss975245229, ss1067952505, ss1291214905, ss1574119303, ss1600345980, ss1643340013, ss1918453115, ss1966766068, ss2019743918, ss2147759682, ss2624385575, ss2697677135, ss2756057035, ss2986946087, ss3343492038, ss3655016048, ss3727117903, ss3746304584, ss3783432479, ss3789087166, ss3793959947, ss3826213811, ss3849015944, ss3894043203, ss3984802081, ss5144310919, ss5319242374, ss5505879263, ss5625689401, ss5832068337, ss5937528023	NC_000001.10:67082441:A:G	NC_000001.11:66616758:A:G	(self)
2492205, 13713430, 87389, 1048144, 3023346, 16183522, 5027732581, ss2163176354, ss3023633621, ss3646680823, ss3686930565, ss3799311209, ss3944670143, ss4452577187, ss5242548907, ss5443583939, ss5514966270, ss5669186242, ss5800666896, ss5848941009, ss5908583871	NC_000001.11:66616758:A:G	NC_000001.11:66616758:A:G	(self)
ss18075344, ss18248902, ss20507353	NT_032977.6:28645511:A:G	NC_000001.11:66616758:A:G	(self)
ss23848051, ss41174632, ss66082248, ss76024993, ss82874819, ss99214583, ss131806786, ss155117330, ss170558161	NT_032977.9:37054359:A:G	NC_000001.11:66616758:A:G	(self)

Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.

No publications for rs11208923

The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.

Genome context:

Select flank length:

Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.

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dbSNP Short Genetic Variations

Welcome to the Reference SNP (rs) Report

Reference SNP (rs) Report

rs11208923