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Select item 67066271.

Mapping Interactions of Microbial Metabolites with Human G-Protein-Coupled Receptors

Dominic A. Colosimo, Jeffrey A. Kohn, Peter M. Luo, Frank J. Piscotta, Sun M. Han, Amanda J. Pickard, Arka Rao, Justin R. Cross, Louis J. Cohen, Sean F. Brady

Cell Host Microbe. 2019 Aug 14; 26(2): 273–282.e7. doi: 10.1016/j.chom.2019.07.002

PMCID:: PMC6706627

Article PDF–3.9M

Select item 54502482.

Analysis of EAWAG-BBD pathway prediction system for the identification of malathion degrading microbes

Subramaniam Sivakumar, Palanivel Anitha, Balsubramanian Ramesh, Gopal Suresh

Bioinformation. 2017; 13(3): 73–77. Published online 2017 Mar 31. doi: 10.6026/97320630013073

PMCID:: PMC5450248

Article PDF–717K

Select item 43810443.

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

Melanie Schirmer, Umer Z. Ijaz, Rosalinda D'Amore, Neil Hall, William T. Sloan, Christopher Quince

Nucleic Acids Res. 2015 Mar 31; 43(6): e37. Published online 2015 Jan 13. doi: 10.1093/nar/gku1341

PMCID:: PMC4381044

Article PDF–3.4M

Select item 42442904.

Gut Microbial Diversity in Rat Model Induced by Rhubarb

Ying Peng, Chunfu Wu, Jingyu Yang, Xiaobo Li

Exp Anim. 2014; 63(4): 415–422. Published online 2014 Jul 22. doi: 10.1538/expanim.63.415

PMCID:: PMC4244290

Article PDF–936K

Select item 40207915.

Protein Languages Differ Depending on Microorganism Lifestyle

Joseph J. Grzymski, Adam G. Marsh

PLoS One. 2014; 9(5): e96910. Published online 2014 May 14. doi: 10.1371/journal.pone.0096910

PMCID:: PMC4020791

Article PDF–1.7M

Select item 36674946.

Ab Initio structure prediction for Escherichia coli: towards genome-wide protein structure modeling and fold assignment

Dong Xu, Yang Zhang

Sci Rep. 2013; 3: 1895. Published online 2013 May 30. doi: 10.1038/srep01895

PMCID:: PMC3667494

Article PDF–4.0M

Select item 33746137.

Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities

John Martin, Sean Sykes, Sarah Young, Karthik Kota, Ravi Sanka, Nihar Sheth, Joshua Orvis, Erica Sodergren, Zhengyuan Wang, George M. Weinstock, Makedonka Mitreva

PLoS One. 2012; 7(6): e36427. Published online 2012 Jun 13. doi: 10.1371/journal.pone.0036427

PMCID:: PMC3374613

Article PDF–3.3M

Select item 34295258.

Eukaryote to gut bacteria transfer of a glycoside hydrolase gene essential for starch breakdown in plants

Maria Cecilia Arias, Étienne G.J. Danchin, Pedro Coutinho, Bernard Henrissat, Steven Ball

Mob Genet Elements. 2012 Mar 1; 2(2): 81–87. doi: 10.4161/mge.20375

PMCID:: PMC3429525

Article PDF–1.7M

Select item 107736459.

Diets intervene osteoporosis via gut-bone axis

Yuan-Wei Zhang, Pei-Ran Song, Si-Cheng Wang, Han Liu, Zhong-Min Shi, Jia-Can Su

Gut Microbes. 2024; 16(1): 2295432. Published online 2024 Jan 4. doi: 10.1080/19490976.2023.2295432

PMCID:: PMC10773645

Article PDF–3.6M

Select item 991008210.

Microbial characterization based on multifractal analysis of metagenomes

Xian-hua Xie, Yu-jie Huang, Guo-sheng Han, Zu-guo Yu, Yuan-lin Ma

Front Cell Infect Microbiol. 2023; 13: 1117421. Published online 2023 Jan 26. doi: 10.3389/fcimb.2023.1117421

PMCID:: PMC9910082

Article PDF–3.0M

Select item 793812211.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039

PMCID:: PMC7938122

Article PDF–1.5M

Select item 711652712.

Rapid discovery and evolution of orthogonal aminoacyl-tRNA synthetase–tRNA pairs

Daniele Cervettini, Shan Tang, Stephen D. Fried, Julian C. W. Willis, Louise F. H. Funke, Lucy J. Colwell, Jason W. Chin

Nat Biotechnol. Author manuscript; available in PMC 2021 Feb 1.

Published in final edited form as: Nat Biotechnol. 2020 Aug 1; 38(8): 989–999. Published online 2020 Apr 13. doi: 10.1038/s41587-020-0479-2

PMCID:: PMC7116527

Article PDF–2.2M

Select item 626606713.

Resveratrol, Metabolic Syndrome, and Gut Microbiota

Alice Chaplin, Christian Carpéné, Josep Mercader

Nutrients. 2018 Nov; 10(11): 1651. Published online 2018 Nov 3. doi: 10.3390/nu10111651

PMCID:: PMC6266067

Article PDF–702K

Select item 579466114.

METABOLITES AND MICROBIAL COMPOSITION OF STOOL OF WOMEN WITH FECAL INCONTINENCE: STUDY DESIGN AND METHODS

Lily A. Arya, Holly E. Richter, J. Eric Jelovsek, Marie Gantz, Sara Cichowski, Halina Zyczynski, Keisha Dyer, Nazema Siddiqui, Cassandra Carberry, Corey Broeckling, Casey Morrow, Purna Kashyap, Susie Meikle

Neurourol Urodyn. Author manuscript; available in PMC 2019 Feb 1.

Published in final edited form as: Neurourol Urodyn. 2018 Feb; 37(2): 634–641. Published online 2017 Aug 1. doi: 10.1002/nau.23360

PMCID:: PMC5794661

Article PDF–438K

Select item 553180915.

DUDE-Seq: Fast, flexible, and robust denoising for targeted amplicon sequencing

Byunghan Lee, Taesup Moon, Sungroh Yoon, Tsachy Weissman

PLoS One. 2017; 12(7): e0181463. Published online 2017 Jul 27. doi: 10.1371/journal.pone.0181463

PMCID:: PMC5531809

Article PDF–5.2M

Select item 512033816.

Alignment-free Transcriptomic and Metatranscriptomic Comparison Using Sequencing Signatures with Variable Length Markov Chains

Weinan Liao, Jie Ren, Kun Wang, Shun Wang, Feng Zeng, Ying Wang, Fengzhu Sun

Sci Rep. 2016; 6: 37243. Published online 2016 Nov 23. doi: 10.1038/srep37243

PMCID:: PMC5120338

Article PDF–2.3M

Select item 498453717.

Expression of arsenic resistance genes in the obligate anaerobe Bacteroides vulgatus ATCC 8482, a gut microbiome bacterium

Jiaojiao Li, Goutam Mandal, Barry P. Rosen

Anaerobe. Author manuscript; available in PMC 2017 Jun 1.

Published in final edited form as: Anaerobe. 2016 Jun; 39: 117–123. Published online 2016 Mar 31. doi: 10.1016/j.anaerobe.2016.03.012

PMCID:: PMC4984537

Article PDF–1.7M

Select item 471255218.

A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

Rosalinda D’Amore, Umer Zeeshan Ijaz, Melanie Schirmer, John G. Kenny, Richard Gregory, Alistair C. Darby, Migun Shakya, Mircea Podar, Christopher Quince, Neil Hall

BMC Genomics. 2016; 17: 55. Published online 2016 Jan 14. doi: 10.1186/s12864-015-2194-9