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Select item 110407541.

Pangenome analysis reveals transposon-driven genome evolution in cotton

Xin He, Zhengyang Qi, Zhenping Liu, Xing Chang, Xianlong Zhang, Jianying Li, Maojun Wang

BMC Biol. 2024; 22: 92. Published online 2024 Apr 23. doi: 10.1186/s12915-024-01893-2

PMCID:: PMC11040754

Abstract Article PDF–3.4M

Select item 100292282.

Genomic rearrangements and evolutionary changes in 3D chromatin topologies in the cotton tribe (Gossypieae)

Xiaochong Li, Jinbin Wang, Yanan Yu, Guo Li, Jinpeng Wang, Changping Li, Zixian Zeng, Ning Li, Zhibin Zhang, Qianli Dong, Yiyang Yu, Xiaofei Wang, Tianya Wang, Corrinne E. Grover, Bin Wang, Bao Liu, Jonathan F. Wendel, Lei Gong

BMC Biol. 2023; 21: 56. Published online 2023 Mar 20. doi: 10.1186/s12915-023-01560-y

PMCID:: PMC10029228

Abstract Article PDF–2.3M

Select item 98601683.

A reference-grade genome assembly for Gossypium bickii and insights into its genome evolution and formation of pigment glands and gossypol

Kuang Sheng, Yue Sun, Meng Liu, Yuefen Cao, Yifei Han, Cheng Li, Uzair Muhammad, Muhammad Khan Daud, Wanru Wang, Huazu Li, Samrana Samrana, Yixuan Hui, Shuijin Zhu, Jinhong Chen, Tianlun Zhao

Plant Commun. 2023 Jan 9; 4(1): 100421. Published online 2022 Aug 10. doi: 10.1016/j.xplc.2022.100421

PMCID:: PMC9860168

Abstract Article PDF–4.1M

Select item 96940444.

Comparative Genomics and Functional Studies of Putative m⁶A Methyltransferase (METTL) Genes in Cotton

Junfeng Cao, Chaochen Huang, Jun’e Liu, Chenyi Li, Xia Liu, Zishou Zheng, Lipan Hou, Jinquan Huang, Lingjian Wang, Yugao Zhang, Xiaoxia Shangguan, Zhiwen Chen

Int J Mol Sci. 2022 Nov; 23(22): 14111. Published online 2022 Nov 15. doi: 10.3390/ijms232214111

PMCID:: PMC9694044

Abstract Article PDF–4.9M

Select item 95223335.

Evolutionary divergence of duplicated genomes in newly described allotetraploid cottons

Renhai Peng, Yanchao Xu, Shilin Tian, Turgay Unver, Zhen Liu, Zhongli Zhou, Xiaoyan Cai, Kunbo Wang, Yangyang Wei, Yuling Liu, Heng Wang, Guanjing Hu, Zhongren Zhang, Corrinne E. Grover, Yuqing Hou, Yuhong Wang, Pengtao Li, Tao Wang, Quanwei Lu, Yuanyuan Wang, Justin L. Conover, Hassan Ghazal, Qinglian Wang, Baohong Zhang, Marc Van Montagu, Yves Van de Peer, Jonathan F. Wendel, Fang Liu

Proc Natl Acad Sci U S A. 2022 Sep 27; 119(39): e2208496119. Published online 2022 Sep 19. doi: 10.1073/pnas.2208496119

PMCID:: PMC9522333

Abstract Article PDF–3.6M

Select item 94831156.

Genome sequence of Gossypium anomalum facilitates interspecific introgression breeding

Zhenzhen Xu, Jiedan Chen, Shan Meng, Peng Xu, Caijiao Zhai, Fang Huang, Qi Guo, Liang Zhao, Yonggang Quan, Yixin Shangguan, Zhuang Meng, Tian Wen, Ya Zhang, Xianggui Zhang, Jun Zhao, Jianwen Xu, Jianguang Liu, Jin Gao, Wanchao Ni, Xianglong Chen, Wei Ji, Nanyi Wang, Xiaoxi Lu, Shihong Wang, Kai Wang, Tianzhen Zhang, Xinlian Shen

Plant Commun. 2022 Sep 12; 3(5): 100350. Published online 2022 Jun 22. doi: 10.1016/j.xplc.2022.100350

PMCID:: PMC9483115

Abstract Article PDF–2.5M

Select item 89529437.

Comprehensive identification and expression analysis of CRY gene family in Gossypium

Chaochen Huang, Pengbo Li, Junfeng Cao, Zishou Zheng, Jinquan Huang, Xiufang Zhang, Xiaoxia Shangguan, Lingjian Wang, Zhiwen Chen

BMC Genomics. 2022; 23: 231. Published online 2022 Mar 24. doi: 10.1186/s12864-022-08440-9

PMCID:: PMC8952943

Abstract Article PDF–4.1M

Select item 87084508.

Stories from the Greenhouse—A Brief on Cotton Seed Germination

Andrea B. Maeda, Leslie W. Wells, Monica A. Sheehan, Jane K. Dever

Plants (Basel) 2021 Dec; 10(12): 2807. Published online 2021 Dec 18. doi: 10.3390/plants10122807

PMCID:: PMC8708450

Abstract Article PDF–2.5M

Select item 83829229.

Comparative Genome Analyses Highlight Transposon-Mediated Genome Expansion and the Evolutionary Architecture of 3D Genomic Folding in Cotton

Maojun Wang, Jianying Li, Pengcheng Wang, Fang Liu, Zhenping Liu, Guannan Zhao, Zhongping Xu, Liuling Pei, Corrinne E Grover, Jonathan F Wendel, Kunbo Wang, Xianlong Zhang

Mol Biol Evol. 2021 Sep; 38(9): 3621–3636. Published online 2021 May 11. doi: 10.1093/molbev/msab128

PMCID:: PMC8382922

Abstract Article PDF–8.0M

Select item 755435010.

Molecular Evolution and Expansion of the KUP Family in the Allopolyploid Cotton Species Gossypium hirsutum and Gossypium barbadense

Kai Fan, Zhijun Mao, Jiaxin Zheng, Yunrui Chen, Zhaowei Li, Weiwei Lin, Yongqiang Zhang, Jinwen Huang, Wenxiong Lin

Front Plant Sci. 2020; 11: 545042. Published online 2020 Sep 30. doi: 10.3389/fpls.2020.545042

PMCID:: PMC7554350

Abstract Article PDF–7.4M

Select item 601742111.

Ectopic Overexpression of a Novel R2R3-MYB, NtMYB2 from Chinese Narcissus Represses Anthocyanin Biosynthesis in Tobacco

Muhammad Anwar, Guiqing Wang, Jiacheng Wu, Saquib Waheed, Andrew C. Allan, Lihui Zeng

Molecules. 2018 Apr; 23(4): 781. Published online 2018 Mar 28. doi: 10.3390/molecules23040781

PMCID:: PMC6017421

Abstract Article PDF–41M

Select item 475470312.

Proteome quantification of cotton xylem sap suggests the mechanisms of potassium-deficiency-induced changes in plant resistance to environmental stresses

Zhiyong Zhang, Maoni Chao, Sufang Wang, Jingjing Bu, Juxiang Tang, Fei Li, Qinglian Wang, Baohong Zhang

Sci Rep. 2016; 6: 21060. Published online 2016 Feb 16. doi: 10.1038/srep21060

PMCID:: PMC4754703

Abstract Article PDF–1.3M

Select item 350517813.

Analyses of the sucrose synthase gene family in cotton: structure, phylogeny and expression patterns

Aiqun Chen, Shae He, Feifei Li, Zhao Li, Mingquan Ding, Qingpo Liu, Junkang Rong

BMC Plant Biol. 2012; 12: 85. Published online 2012 Jun 13. doi: 10.1186/1471-2229-12-85

PMCID:: PMC3505178

Abstract Article PDF–3.3M

Select item 223381014.

Recent Advances in Cotton Genomics

Hong-Bin Zhang, Yaning Li, Baohua Wang, Peng W. Chee

Int J Plant Genomics. 2008; 2008: 742304. Published online 2008 Jan 23. doi: 10.1155/2008/742304

PMCID:: PMC2233810

Abstract Article PDF–2.0M

Select item 215171115.

Toward Sequencing Cotton (Gossypium) Genomes

Z. Jeffrey Chen, Brian E. Scheffler, Elizabeth Dennis, Barbara A. Triplett, Tianzhen Zhang, Wangzhen Guo, Xiaoya Chen, David M. Stelly, Pablo D. Rabinowicz, Christopher D. Town, Tony Arioli, Curt Brubaker, Roy G. Cantrell, Jean-Marc Lacape, Mauricio Ulloa, Peng Chee, Alan R. Gingle, Candace H. Haigler, Richard Percy, Sukumar Saha, Thea Wilkins, Robert J. Wright, Allen Van Deynze, Yuxian Zhu, Shuxun Yu, Ibrokhim Abdurakhmonov, Ishwarappa Katageri, P. Ananda Kumar, Mehboob-ur-Rahman, Yusuf Zafar, John Z. Yu, Russell J. Kohel, Jonathan F. Wendel, Andrew H. Paterson

Plant Physiol. 2007 Dec; 145(4): 1303–1310. doi: 10.1104/pp.107.107672

PMCID:: PMC2151711

Article PDF–189K

Select item 1022874816.

Identification and characterization of the LDAP family revealed GhLDAP2_Dt enhances drought tolerance in cotton

Yanyan Zhao, Bailin Duan, Yuxin Liu, Yuqing Wu, Dongliang Yu, Liping Ke, Fangfang Cai, Jun Mei, Ning Zhu, Yuqiang Sun

Front Plant Sci. 2023; 14: 1167761. Published online 2023 May 16. doi: 10.3389/fpls.2023.1167761

PMCID:: PMC10228748

Abstract Article PDF–8.2M

Select item 918275717.

Conservation and Divergence of Phosphoenolpyruvate Carboxylase Gene Family in Cotton

Yangyang Wei, Zhaoguo Li, Tom C. Wedegaertner, Susan Jaconis, Sumei Wan, Zilin Zhao, Zhen Liu, Yuling Liu, Juyun Zheng, Kater D. Hake, Renhai Peng, Baohong Zhang

Plants (Basel) 2022 Jun; 11(11): 1482. Published online 2022 May 31. doi: 10.3390/plants11111482

PMCID:: PMC9182757

Abstract Article PDF–5.5M

Select item 904005118.

Global Patterns of Subgenome Evolution in Organelle-Targeted Genes of Six Allotetraploid Angiosperms

Joel Sharbrough, Justin L. Conover, Matheus Fernandes Gyorfy, Corrinne E. Grover, Emma R. Miller, Jonathan F. Wendel, Daniel B. Sloan

Mol Biol Evol. 2022; 39(4): msac074. Published online 2022 Apr 6. doi: 10.1093/molbev/msac074

PMCID:: PMC9040051

Abstract Article PDF–1.7M

Select item 870509619.

CottonGen: The Community Database for Cotton Genomics, Genetics, and Breeding Research

Jing Yu, Sook Jung, Chun-Huai Cheng, Taein Lee, Ping Zheng, Katheryn Buble, James Crabb, Jodi Humann, Heidi Hough, Don Jones, J. Todd Campbell, Josh Udall, Dorrie Main

Plants (Basel) 2021 Dec; 10(12): 2805. Published online 2021 Dec 18. doi: 10.3390/plants10122805

PMCID:: PMC8705096

Abstract Article PDF–2.0M

Select item 869236920.

Functional Characterization of Cotton C-Repeat Binding Factor Genes Reveal Their Potential Role in Cold Stress Tolerance

Jiangna Liu, Richard Odongo Magwanga, Yanchao Xu, Tingting Wei, Joy Nyangasi Kirungu, Jie Zheng, Yuqing Hou, Yuhong Wang, Stephen Gaya Agong, Erick Okuto, Kunbo Wang, Zhongli Zhou, Xiaoyan Cai, Fang Liu

Front Plant Sci. 2021; 12: 766130. Published online 2021 Dec 8. doi: 10.3389/fpls.2021.766130

PMCID:: PMC8692369

Abstract Article PDF–15M

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