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Items: 15

Select item 79381221.

Information theoretic perspective on genome clustering

Alaguraj Veluchamy, Preeti Mehta, K.V. Srividhya, Hirendra Vikram, M.K. Govind, Ramneek Gupta, Abdul Aziz Bin Dukhyil, Raed Abdullah Alharbi, Saleh Abdullah Aloyuni, Mohamed M. Hassan, S. Krishnaswamy

Saudi J Biol Sci. 2021 Mar; 28(3): 1867–1889. Published online 2020 Dec 31. doi: 10.1016/j.sjbs.2020.12.039

PMCID:: PMC7938122

Abstract Article PDF–1.5M

Select item 49450682.

Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment

Dragana Dobrijevic, Anne-Laure Abraham, Alexandre Jamet, Emmanuelle Maguin, Maarten van de Guchte

PLoS One. 2016; 11(7): e0159030. Published online 2016 Jul 14. doi: 10.1371/journal.pone.0159030

PMCID:: PMC4945068

Abstract Article PDF–1.7M

Select item 39276073.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 31712994.

Bioprospecting metagenomics of decaying wood: mining for new glycoside hydrolases

Luen-Luen Li, Safiyh Taghavi, Sean M McCorkle, Yian-Biao Zhang, Michael G Blewitt, Roman Brunecky, William S Adney, Michael E Himmel, Phillip Brumm, Colleen Drinkwater, David A Mead, Susannah G Tringe, Daniel van der Lelie

Biotechnol Biofuels. 2011; 4: 23. Published online 2011 Aug 4. doi: 10.1186/1754-6834-4-23

PMCID:: PMC3171299

Abstract Article PDF–2.6M

Select item 28794255.

Identification of Novel Pathogenicity Loci in Clostridium perfringens Strains That Cause Avian Necrotic Enteritis

Dion Lepp, Bryan Roxas, Valeria R. Parreira, Pradeep R. Marri, Everett L. Rosey, Joshua Gong, J. Glenn Songer, Gayatri Vedantam, John F. Prescott

PLoS One. 2010; 5(5): e10795. Published online 2010 May 24. doi: 10.1371/journal.pone.0010795

Correction in:: PLoS One. 2010; 5(6): 10.1371/annotation/501e5656-71ac-420f-a194-80141f6381e5.

PMCID:: PMC2879425

Abstract Article PDF–1.0M

Select item 27492116.

Bioinformatics and Structural Characterization of a Hypothetical Protein from Streptococcus mutans: Implication of Antibiotic Resistance

Jie Nan, Erik Brostromer, Xiang-Yu Liu, Ole Kristensen, Xiao-Dong Su

PLoS One. 2009; 4(10): e7245. Published online 2009 Oct 2. doi: 10.1371/journal.pone.0007245

PMCID:: PMC2749211

Abstract Article PDF–770K

Select item 27770097.

Metagenome Fragment Classification Using N-Mer Frequency Profiles

Gail Rosen, Elaine Garbarine, Diamantino Caseiro, Robi Polikar, Bahrad Sokhansanj

Adv Bioinformatics. 2008; 2008: 205969. Published online 2008 Nov 16. doi: 10.1155/2008/205969

PMCID:: PMC2777009

Abstract Article PDF–1.6M

Select item 105592568.

Strongyloides stercoralis infection reduces Fusicatenibacter and Anaerostipes in the gut and increases bacterial amino-acid metabolism in early-stage chronic kidney disease

Na T.D. Tran, Apisit Chaidee, Achirawit Surapinit, Manachai Yingklang, Sitiruk Roytrakul, Sawanya Charoenlappanit, Porntip Pinlaor, Nuttanan Hongsrichan, Hai Nguyen Thi, Sirirat Anutrakulchai, Ubon Cha'on, Somchai Pinlaor

Heliyon. 2023 Sep; 9(9): e19859. Published online 2023 Sep 6. doi: 10.1016/j.heliyon.2023.e19859

PMCID:: PMC10559256

Abstract Article PDF–4.0M

Select item 68374939.

Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598

Maryna Vasylkivska, Katerina Jureckova, Barbora Branska, Karel Sedlar, Jan Kolek, Ivo Provaznik, Petra Patakova

PLoS One. 2019; 14(11): e0224560. Published online 2019 Nov 7. doi: 10.1371/journal.pone.0224560

PMCID:: PMC6837493

Abstract Article PDF–2.7M

Select item 628359810.

Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes

Joana C. Xavier, Kiran Raosaheb Patil, Isabel Rocha

PLoS Comput Biol. 2018 Nov; 14(11): e1006556. Published online 2018 Nov 16. doi: 10.1371/journal.pcbi.1006556

PMCID:: PMC6283598

Abstract Article PDF–3.4M

Select item 473790011.

Long-Term Oil Contamination Alters the Molecular Ecological Networks of Soil Microbial Functional Genes

Yuting Liang, Huihui Zhao, Ye Deng, Jizhong Zhou, Guanghe Li, Bo Sun

Front Microbiol. 2016; 7: 60. Published online 2016 Feb 3. doi: 10.3389/fmicb.2016.00060

PMCID:: PMC4737900

Abstract Article PDF–1.9M

Select item 337461312.

Optimizing Read Mapping to Reference Genomes to Determine Composition and Species Prevalence in Microbial Communities

John Martin, Sean Sykes, Sarah Young, Karthik Kota, Ravi Sanka, Nihar Sheth, Joshua Orvis, Erica Sodergren, Zhengyuan Wang, George M. Weinstock, Makedonka Mitreva

PLoS One. 2012; 7(6): e36427. Published online 2012 Jun 13. doi: 10.1371/journal.pone.0036427