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Items: 14

Select item 39276071.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 28068652.

Evolution of DNA ligases of Nucleo-Cytoplasmic Large DNA viruses of eukaryotes: a case of hidden complexity

Natalya Yutin, Eugene V Koonin

Biol Direct. 2009; 4: 51. Published online 2009 Dec 18. doi: 10.1186/1745-6150-4-51

PMCID:: PMC2806865

Abstract Article PDF–399K

Select item 26597693.

Genome-Wide Functional Divergence after the Symbiosis of Proteobacteria with Insects Unraveled through a Novel Computational Approach

Christina Toft, Tom A. Williams, Mario A. Fares

PLoS Comput Biol. 2009 Apr; 5(4): e1000344. Published online 2009 Apr 3. doi: 10.1371/journal.pcbi.1000344

PMCID:: PMC2659769

Abstract Article PDF–432K

Select item 36555284.

Bacterial Response Regulators: Versatile Regulatory Strategies from Common Domains

Rong Gao, Timothy R. Mack, Ann M. Stock

Trends Biochem Sci. Author manuscript; available in PMC 2013 May 16.

Published in final edited form as: Trends Biochem Sci. 2007 May; 32(5): 225–234. Published online 2007 Apr 12. doi: 10.1016/j.tibs.2007.03.002

PMCID:: PMC3655528

Abstract Article PDF–4.2M

Select item 14888585.

Structural proteomics of minimal organisms: Conservation of protein fold usage and evolutionary implications

John-Marc Chandonia, Sung-Hou Kim

BMC Struct Biol. 2006; 6: 7. Published online 2006 Mar 28. doi: 10.1186/1472-6807-6-7

PMCID:: PMC1488858

Abstract Article PDF–432K

Select item 50311346.

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics

Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez

Version 3. F1000Res. 2016; 5: 1987. Published online 2017 Jun 27. doi: 10.12688/f1000research.9416.3

PMCID:: PMC5031134

Abstract Article PDF–5.2M

Select item 47066507.

The mysterious orphans of Mycoplasmataceae

Tatiana V. Tatarinova, Inna Lysnyansky, Yuri V. Nikolsky, Alexander Bolshoy

Biol Direct. 2016; 11: 2. Published online 2016 Jan 8. doi: 10.1186/s13062-015-0104-3

PMCID:: PMC4706650

Abstract Article PDF–1.6M

Select item 42995208.

Genome-wide gene order distances support clustering the gram-positive bacteria

Christopher H. House, Matteo Pellegrini, Sorel T. Fitz-Gibbon

Front Microbiol. 2014; 5: 785. Published online 2015 Jan 20. doi: 10.3389/fmicb.2014.00785

PMCID:: PMC4299520

Abstract Article PDF–8.7M

Select item 44359009.

RNase E in the γ-Proteobacteria: conservation of intrinsically disordered noncatalytic region and molecular evolution of microdomains

Soraya Aït-Bara, Agamemnon J. Carpousis, Yves Quentin

Mol Genet Genomics. 2015; 290(3): 847–862. Published online 2014 Nov 29. doi: 10.1007/s00438-014-0959-5

PMCID:: PMC4435900

Abstract Article PDF–9.2M

Select item 401444510.

Predicting the Minimal Translation Apparatus: Lessons from the Reductive Evolution of Mollicutes

Henri Grosjean, Marc Breton, Pascal Sirand-Pugnet, Florence Tardy, François Thiaucourt, Christine Citti, Aurélien Barré, Satoko Yoshizawa, Dominique Fourmy, Valérie de Crécy-Lagard, Alain Blanchard

PLoS Genet. 2014 May; 10(5): e1004363. Published online 2014 May 8. doi: 10.1371/journal.pgen.1004363

PMCID:: PMC4014445

Abstract Article PDF–2.6M

Select item 309354411.

Phylogenetic Distribution and Evolutionary History of Bacterial DEAD-Box Proteins

Varinia López-Ramírez, Luis D. Alcaraz, Gabriel Moreno-Hagelsieb, Gabriela Olmedo-Álvarez

J Mol Evol. 2011; 72(4): 413–431. Published online 2011 Mar 25. doi: 10.1007/s00239-011-9441-8

PMCID:: PMC3093544

Abstract Article PDF–9.0M

Select item 257081012.

High Rate of Mobilization for bla_CTX-Ms

Miriam Barlow, Rebecca A. Reik, Stephen D. Jacobs, Mónica Medina, Matthew P. Meyer, John E. McGowan, Jr., Fred C. Tenover

Emerg Infect Dis. 2008 Mar; 14(3): 423–428. doi: 10.3201/eid1403.070405

PMCID:: PMC2570810

Abstract Article PDF–253K

Select item 224610013.

The cyanobacterial endosymbiont of the unicellular algae Rhopalodia gibba shows reductive genome evolution

Christoph Kneip, Christine Voβ, Peter J Lockhart, Uwe G Maier

BMC Evol Biol. 2008; 8: 30. Published online 2008 Jan 28. doi: 10.1186/1471-2148-8-30

PMCID:: PMC2246100

Abstract Article PDF–1.6M

Select item 136007514.

Analysis of and function predictions for previously conserved hypothetical or putative proteins in Blochmannia floridanus

Peter Gaudermann, Ina Vogl, Evelyn Zientz, Francisco J Silva, Andres Moya, Roy Gross, Thomas Dandekar

BMC Microbiol. 2006; 6: 1. Published online 2006 Jan 9. doi: 10.1186/1471-2180-6-1

PMCID:: PMC1360075

Abstract Article PDF–410K

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