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Sample GSM228521 Query DataSets for GSM228521
Status Public on Sep 28, 2007
Title CGH WG-set_6of8 NA18505 vs. NA15510
Sample type genomic
 
Channel 1
Source name NA15510
Organism Homo sapiens
Characteristics http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM15510
female
Treatment protocol Nimblegen kit
Growth protocol Nimblegen kit
Extracted molecule genomic DNA
Extraction protocol Nimblegen kit
Label Cy5
Label protocol Nimblegen kit
 
Channel 2
Source name NA18505
Organism Homo sapiens
Characteristics http://ccr.coriell.org/Sections/Search/Sample_Detail.aspx?Ref=GM18505
female
Biomaterial provider Coriell
Treatment protocol Nimblegen kit
Growth protocol Nimblegen kit
Extracted molecule genomic DNA
Extraction protocol Nimblegen kit
Label Cy3
Label protocol Nimblegen kit
 
 
Hybridization protocol Nimblegen kit
Scan protocol Nimblegen protocol
Description hybridized at Nimblegen facilities in Iceland
Data processing Qspline normalization (Bioconductor)
 
Submission date Sep 10, 2007
Last update date Aug 14, 2011
Contact name Jan Oliver Korbel
Phone +1 203 432 5405
Fax +1 203 432 5175
URL http://bioinfo.mbb.yale.edu/array/
Organization name Yale University
Street address 266 Whitney Avenue
City New Haven
State/province CT
ZIP/Postal code 06520
Country USA
 
Platform ID GPL5819
Series (1)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505

Data table header descriptions
ID_REF
VALUE Qspline-normalized log2 ratio (Cy3/Cy5)

Data table
ID_REF VALUE
CHR11P016555051 -0.131
CHR11P016555717 -0.047
CHR11P016556497 0.055
CHR11P016557168 0.180
CHR11P016557858 0.147
CHR11P016558503 -0.162
CHR11P016560632 0.314
CHR11P016562762 -0.232
CHR11P016563474 -0.007
CHR11P016564170 0.610
CHR11P016564866 0.197
CHR11P016565523 -0.181
CHR11P016566268 0.085
CHR11P016567698 0.043
CHR11P016568323 -0.434
CHR11P016569756 0.176
CHR11P016570501 0.422
CHR11P016571106 -0.067
CHR11P016571806 0.299
CHR11P016572585 -0.005

Total number of rows: 385573

Table truncated, full table size 8468 Kbytes.




Supplementary file Size Download File type/resource
GSM228521_130036_532.pair.gz 6.2 Mb (ftp)(http) PAIR
GSM228521_130036_635.pair.gz 6.2 Mb (ftp)(http) PAIR
Processed data included within Sample table

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