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Series GSE83820 Query DataSets for GSE83820
Status Public on Jun 29, 2016
Title Study of the molecular stability of patient-derived tumor xenograft (PDX) for human renal cell carcinoma (RCC) in nude mice during subsequent passages in mice
Organism Homo sapiens
Experiment type Expression profiling by array
Summary We established a large panel of preclinical models of human RCC directly from patients, faithfully reproducing the biological features of the original tumor. RCC tissues were collected for 8 years from 336 patients undergoing surgery, xenografted subcutaneously in nude mice, and serially passaged into new mice up to 13 passages. Tissue samples from the primary tumor and tumors grown in mice through passages were analyzed at the histology, genetic and for of them at the molecular levels for biological tissue stability. We established a large panel of 30 RCC models and 5 them of the clear cell type (clear cell renal cell carcinoma, CCC) were characterized at the mRNA expression level.
 
Overall design We used Affymetrix whole genome microarrays to analyze the stability of the PDX models comparing the primary tumor (P0) with the subsequent passages in mice (P1 …).
 
Contributor(s) Lang H, Beraud C, Bethry A, Danilin S, Lindner V, Coquard C, Rothhut S, Massfelder T
Citation(s) 27449081
Submission date Jun 28, 2016
Last update date Apr 19, 2019
Contact name Thierry Massfelder
Organization name INSERM
Street address 11 rue Humann
City Strasbourg
ZIP/Postal code 67085
Country France
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (25)
GSM2219090 Primary tumor of RCCPDX13 model
GSM2219091 RCCPDX13 model at passage P1
GSM2219092 RCCPDX13 model at passage P2
Relations
BioProject PRJNA327105

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE83820_RAW.tar 117.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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