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Status |
Public on Dec 05, 2008 |
Title |
Gene expression levels in African Americans vary with genetic ancestry at most expressed genes |
Organism |
Homo sapiens |
Experiment type |
Expression profiling by array
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Summary |
Variation in gene expression is a fundamental aspect of human phenotypic variation. Several studies have analyzed gene expression levels in populations of different continental ancestry, and concluded that there is variation across populations at a fraction of expressed genes. Here we analyze gene expression levels in African American cell lines, which differ from previously analyzed cell lines in that samples from this population have variable proportions of continental ancestry. We show that for most genes examined, gene expression varies with genetic ancestry. Keywords: Human Gene Expression Study
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Overall design |
Lymphoblastoid cell lines (LCL) for 60 HapMap CEU, 60 HapMap YRI, and 82 AFA from the Human Variation Panel were obtained from Coriell Cell Repositories. LCLs were grown in culture, total RNA was extracted and hybridized to Affymetrix HG-FOCUS arrays.
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Contributor(s) |
Price AL, Patterson N, Hancks DC, Reich D, Cheung VG, Spielman RS |
Citation(s) |
19057673 |
Submission date |
Mar 14, 2008 |
Last update date |
Jul 08, 2016 |
Contact name |
Dustin Hancks |
E-mail(s) |
hancks@mail.med.upenn.edu
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Phone |
215-898-2080
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Organization name |
University of Pennsylvania
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Department |
Genetics
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Lab |
Kazazian
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Street address |
415 curie blvd rm 515 crb
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City |
philadelphia |
State/province |
PA |
ZIP/Postal code |
19104 |
Country |
USA |
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Platforms (1) |
GPL201 |
[HG-Focus] Affymetrix Human HG-Focus Target Array |
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Samples (244)
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GSM273274 |
GM06993, Technical replicate |
GSM273275 |
GM06994 |
GSM273276 |
GM06994, Technical replicate |
GSM273277 |
GM07000 |
GSM273278 |
GM07000, Technical replicate |
GSM273279 |
GM07022 |
GSM273280 |
GM07022, Technical replicate |
GSM273281 |
GM07034 |
GSM273282 |
GM07034, Technical replicate |
GSM273283 |
GM07055 |
GSM273284 |
GM07055, Technical replicate |
GSM273285 |
GM07056 |
GSM273286 |
GM07056, Technical replicate |
GSM273287 |
GM07345 |
GSM273288 |
GM07345, Technical replicate |
GSM273289 |
GM07357 |
GSM273290 |
GM07357, Technical replicate |
GSM273291 |
GM11829 |
GSM273292 |
GM11830 |
GSM273293 |
GM11831 |
GSM273294 |
GM11832 |
GSM273295 |
GM11839 |
GSM273296 |
GM11840 |
GSM273297 |
GM11881 |
GSM273298 |
GM11881, Technical replicate |
GSM273299 |
GM11882 |
GSM273300 |
GM11882, Technical replicate |
GSM273301 |
GM11992 |
GSM273302 |
GM11992, Technical replicate |
GSM273303 |
GM11993 |
GSM273304 |
GM11993, Technical replicate |
GSM273305 |
GM11994 |
GSM273306 |
GM11994, Technical replicate |
GSM273307 |
GM11995 |
GSM273308 |
GM11995, Technical replicate |
GSM273309 |
GM12003 |
GSM273310 |
GM12004 |
GSM273311 |
GM12005 |
GSM273312 |
GM12006 |
GSM273313 |
GM12043 |
GSM273314 |
GM12043, Technical replicate |
GSM273315 |
GM12044 |
GSM273316 |
GM12044, Technical replicate |
GSM273317 |
GM12056 |
GSM273318 |
GM12057 |
GSM273319 |
GM12144 |
GSM273320 |
GM12144, Technical replicate |
GSM273321 |
GM12145 |
GSM273322 |
GM12145, Technical replicate |
GSM273323 |
GM12146 |
GSM273324 |
GM12146, Technical replicate |
GSM273325 |
GM12154 |
GSM273326 |
GM12154, Technical replicate |
GSM273327 |
GM12155 |
GSM273328 |
GM12156 |
GSM273329 |
GM12156, Technical replicate |
GSM273330 |
GM12234 |
GSM273331 |
GM12236 |
GSM273332 |
GM12236, Technical replicate |
GSM273333 |
GM12239 |
GSM273334 |
GM12239, Technical replicate |
GSM273335 |
GM12248 |
GSM273336 |
GM12248, Technical replicate |
GSM273337 |
GM12249 |
GSM273338 |
GM12249, Technical replicate |
GSM273339 |
GM12264 |
GSM273340 |
GM12716 |
GSM273341 |
GM12717 |
GSM273342 |
GM12750 |
GSM273343 |
GM12750, Technical replicate |
GSM273344 |
GM12751 |
GSM273345 |
GM12751, Technical replicate |
GSM273346 |
GM12760 |
GSM273347 |
GM12760, Technical replicate |
GSM273348 |
GM12761 |
GSM273349 |
GM12761, Technical replicate |
GSM273350 |
GM12762 |
GSM273351 |
GM12762, Technical replicate |
GSM273352 |
GM12763 |
GSM273353 |
GM12763, Technical replicate |
GSM273354 |
GM12812 |
GSM273355 |
GM12812, Technical replicate |
GSM273356 |
GM12813 |
GSM273357 |
GM12813, Technical replicate |
GSM273358 |
GM12814 |
GSM273359 |
GM12814, Technical replicate |
GSM273360 |
GM12815 |
GSM273361 |
GM12815, Technical replicate |
GSM273362 |
GM12872 |
GSM273363 |
GM12872, Technical replicate |
GSM273364 |
GM12873 |
GSM273365 |
GM12873, Technical replicate |
GSM273366 |
GM12874 |
GSM273367 |
GM12874, Technical replicate |
GSM273368 |
GM12875 |
GSM273369 |
GM12875, Technical replicate |
GSM273370 |
GM12891 |
GSM273371 |
GM12892 |
GSM273372 |
GM17102 |
GSM273373 |
GM17103 |
GSM273374 |
GM17104 |
GSM273375 |
GM17105 |
GSM273376 |
GM17106 |
GSM273377 |
GM17107 |
GSM273378 |
GM17108 |
GSM273379 |
GM17109 |
GSM273380 |
GM17110 |
GSM273381 |
GM17111 |
GSM273382 |
GM17112 |
GSM273383 |
GM17113 |
GSM273384 |
GM17114 |
GSM273385 |
GM17115 |
GSM273386 |
GM17116 |
GSM273387 |
GM17117 |
GSM273388 |
GM17118 |
GSM273389 |
GM17119 |
GSM273390 |
GM17120 |
GSM273391 |
GM17121 |
GSM273392 |
GM17122 |
GSM273393 |
GM17123 |
GSM273394 |
GM17124 |
GSM273395 |
GM17125 |
GSM273396 |
GM17126 |
GSM273397 |
GM17127 |
GSM273398 |
GM17128 |
GSM273399 |
GM17129 |
GSM273400 |
GM17130 |
GSM273401 |
GM17131 |
GSM273402 |
GM17132 |
GSM273403 |
GM17133 |
GSM273404 |
GM17134 |
GSM273405 |
GM17135 |
GSM273406 |
GM17136 |
GSM273407 |
GM17137 |
GSM273408 |
GM17138 |
GSM273409 |
GM17139 |
GSM273410 |
GM17140 |
GSM273411 |
GM17141 |
GSM273412 |
GM17142 |
GSM273413 |
GM17143 |
GSM273414 |
GM17144 |
GSM273415 |
GM17145 |
GSM273416 |
GM17146 |
GSM273417 |
GM17147 |
GSM273418 |
GM17148 |
GSM273419 |
GM17149 |
GSM273420 |
GM17150 |
GSM273421 |
GM17154 |
GSM273422 |
GM17155 |
GSM273423 |
GM17156 |
GSM273424 |
GM17157 |
GSM273425 |
GM17158 |
GSM273426 |
GM17159 |
GSM273427 |
GM17160 |
GSM273428 |
GM17161 |
GSM273429 |
GM17162 |
GSM273430 |
GM17163 |
GSM273431 |
GM17176 |
GSM273432 |
GM17177 |
GSM273433 |
GM17178 |
GSM273434 |
GM17179 |
GSM273435 |
GM17180 |
GSM273436 |
GM17181 |
GSM273437 |
GM17182 |
GSM273438 |
GM17183 |
GSM273439 |
GM17184 |
GSM273440 |
GM17185 |
GSM273441 |
GM17187 |
GSM273442 |
GM17188 |
GSM273443 |
GM17189 |
GSM273444 |
GM17190 |
GSM273445 |
GM17191 |
GSM273446 |
GM17192 |
GSM273447 |
GM17193 |
GSM273448 |
GM17194 |
GSM273449 |
GM17195 |
GSM273450 |
GM17196 |
GSM273451 |
GM17197 |
GSM273452 |
GM17198 |
GSM273453 |
GM17199 |
GSM273454 |
GM17200 |
GSM273455 |
GM18501 |
GSM273456 |
GM18502 |
GSM273457 |
GM18504 |
GSM273458 |
GM18505 |
GSM273459 |
GM18507 |
GSM273460 |
GM18508 |
GSM273461 |
GM18516 |
GSM273462 |
GM18517 |
GSM273463 |
GM18522 |
GSM273464 |
GM18523 |
GSM273465 |
GM18852 |
GSM273466 |
GM18853 |
GSM273467 |
GM18855 |
GSM273468 |
GM18856 |
GSM273469 |
GM18858 |
GSM273470 |
GM18859 |
GSM273471 |
GM18861 |
GSM273472 |
GM18862 |
GSM273473 |
GM18870 |
GSM273474 |
GM18871 |
GSM273475 |
GM18912 |
GSM273476 |
GM18913 |
GSM273477 |
GM19092 |
GSM273478 |
GM19093 |
GSM273479 |
GM19098 |
GSM273480 |
GM19099 |
GSM273481 |
GM19101 |
GSM273482 |
GM19102 |
GSM273483 |
GM19116 |
GSM273484 |
GM19119 |
GSM273485 |
GM19127 |
GSM273486 |
GM19128 |
GSM273487 |
GM19130 |
GSM273488 |
GM19131 |
GSM273489 |
GM19137 |
GSM273490 |
GM19138 |
GSM273491 |
GM19140 |
GSM273492 |
GM19141 |
GSM273493 |
GM19143 |
GSM273494 |
GM19144 |
GSM273495 |
GM19152 |
GSM273496 |
GM19153 |
GSM273497 |
GM19159 |
GSM273498 |
GM19160 |
GSM273499 |
GM19171 |
GSM273500 |
GM19172 |
GSM273501 |
GM19192 |
GSM273502 |
GM19193 |
GSM273503 |
GM19200 |
GSM273504 |
GM19201 |
GSM273505 |
GM19203 |
GSM273506 |
GM19204 |
GSM273507 |
GM19206 |
GSM273508 |
GM19207 |
GSM273509 |
GM19209 |
GSM273510 |
GM19210 |
GSM273511 |
GM19222 |
GSM273512 |
GM19223 |
GSM273513 |
GM19238 |
GSM273514 |
GM19239 |
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Relations |
BioProject |
PRJNA107429 |
Supplementary file |
Size |
Download |
File type/resource |
GSE10824_RAW.tar |
332.2 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
Processed data included within Sample table |
Processed data provided as supplementary file |
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