Bacteroides xylanisolvens (ID 2240) - Genome

Bacteroides xylanisolvens
Representative genome: Bacteroides xylanisolvens
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All 286 genomes for species:
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ID: 2240

Organism Overview ; Genome Assembly and Annotation report [286] ; Genome Tree report [169] ; Plasmid Annotation Report [18]

Bacteroides xylanisolvens

Bacteroides xylanisolvens overview

Lineage: Bacteria[37505]; Bacteroidota[4362]; Bacteroidia[1424]; Bacteroidales[1324]; Bacteroidaceae[156]; Bacteroides[83]; Bacteroides xylanisolvens[1]

Bacteroides xylanisolvens.Xylan-dissolving organism. Isolated from human feces.

Summary

Sequence data:

genome assemblies: 286; sequence reads: 3

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 6.24977

median protein count: 5009

median GC%: 42

Publications (limited to 20 most recent records)

MuDoGeR: Multi-Domain Genome recovery from metagenomes made easy. Rocha U, et al. Mol Ecol Resour 2024 Feb
Genome-centric analyses of 165 metagenomes show that mobile genetic elements are crucial for the transmission of antimicrobial resistance genes to pathogens in activated sludge and wastewater. Abdulkadir N, et al. Microbiol Spectr 2024 Mar 5
Establishment of a non-Westernized gut microbiota in men who have sex with men is associated with sexual practices. Huang KD, et al. Cell Rep Med 2024 Mar 19
Bacillamide D produced by Bacillus cereus from the mouse intestinal bacterial collection (miBC) is a potent cytotoxin in vitro. Hohmann M, et al. Commun Biol 2024 May 28
The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping. Beresford-Jones BS, et al. Cell Host Microbe 2022 Jan 12
Strain-level profiling of viable microbial community by selective single-cell genome sequencing. Hosokawa M, et al. Sci Rep 2022 Mar 15
A novel Bacteroides metallo-β-lactamase (MBL) and its gene (crxA) in Bacteroides xylanisolvens revealed by genomic sequencing and functional analysis. Sóki J, et al. J Antimicrob Chemother 2022 May 29
Recovery of Metagenome-Assembled Genomes from a Human Fecal Sample with Pacific Biosciences High-Fidelity Sequencing. Plaza Oñate F, et al. Microbiol Resour Announc 2022 Jun 16
HiFi metagenomic sequencing enables assembly of accurate and complete genomes from human gut microbiota. Kim CY, et al. Nat Commun 2022 Oct 26
The distribution of antibiotic resistance genes in chicken gut microbiota commensals. Juricova H, et al. Sci Rep 2021 Feb 8
Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. Gilroy R, et al. PeerJ 2021
Mobile Type VI secretion system loci of the gut Bacteroidales display extensive intra-ecosystem transfer, multi-species spread and geographical clustering. García-Bayona L, et al. PLoS Genet 2021 Apr
A synthetic consortium of 100 gut commensals modulates the composition and function in a colon model of the microbiome of elderly subjects. Perez M, et al. Gut Microbes 2021 Jan-Dec
MGnify: the microbiome analysis resource in 2020. Mitchell AL, et al. Nucleic Acids Res 2020 Jan 8
Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut. Jiang X, et al. Science 2019 Jan 11
A library of human gut bacterial isolates paired with longitudinal multiomics data enables mechanistic microbiome research. Poyet M, et al. Nat Med 2019 Sep
Human gut bacteria contain acquired interbacterial defence systems. Ross BD, et al. Nature 2019 Nov
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Mitchell AL, et al. Nucleic Acids Res 2018 Jan 4
Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures. Medvecky M, et al. BMC Genomics 2018 Jul 31
Culturing of 'unculturable' human microbiota reveals novel taxa and extensive sporulation. Browne HP, et al. Nature 2016 May 26

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Representative (genome information for reference and representative genomes)

Reference genome:

Bacteroides xylanisolvens ASM1828913v1

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	-	NZ_CP072216.1	CP072216.1	6.43	42.0	5,032	15	72	2	5,225	104

Plsm	pBxylCL11T00C03-1	NZ_CP072217.1	CP072217.1	0.03	47.4	34	-	-	-	34	-

Plsm	pBxylCL11T00C03-2	NZ_CP072218.1	CP072218.1	0	45.8	7	-	-	-	7	-

Plsm	pMMCAT_BxylCL11T00-1	NZ_CP072219.1	CP072219.1	0.1	42.7	118	-	-	-	122	4

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