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    RRT5 Rrt5p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 850591, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RRT5
    Official Full Name
    Rrt5p
    Primary source
    SGD:S000001928
    Locus tag
    YFR032C
    See related
    AllianceGenome:SGD:S000001928; FungiDB:YFR032C; VEuPathDB:YFR032C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable mRNA binding activity. Located in prospore membrane. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See RRT5 in Genome Data Viewer
    Location:
    chromosome: VI
    Exon count:
    1
    Sequence:
    Chromosome: VI; NC_001138.5 (222090..222959, complement)

    Chromosome VI - NC_001138.5Genomic Context describing neighboring genes Neighboring gene ribosomal 60S subunit protein L2A Neighboring gene ncRNA Neighboring gene ribosomal 60S subunit protein L29 Neighboring gene Min10p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001138.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression profiles of transcripts from 126 open reading frames in the entire chromosome VI of Saccharomyces cerevisiae by systematic northern analyses. Naitou M, et al. Yeast, 1997 Oct. PMID 9364751
    2. Yeast screening system reveals the inhibitory mechanism of cancer cell proliferation by benzyl isothiocyanate through down-regulation of Mis12. Abe-Kanoh N, et al. Sci Rep, 2019 Jun 20. PMID 31222108, Free PMC Article
    3. Genetic identification of factors that modulate ribosomal DNA transcription in Saccharomyces cerevisiae. Hontz RD, et al. Genetics, 2009 May. PMID 19270272, Free PMC Article
    4. A visual screen of protein localization during sporulation identifies new components of prospore membrane-associated complexes in budding yeast. Lam C, et al. Eukaryot Cell, 2014 Mar. PMID 24390141, Free PMC Article
    5. Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. Murakami Y, et al. Nat Genet, 1995 Jul. PMID 7670463

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in prospore membrane HDA PubMed 
    part_of ribonucleoprotein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    Rrt5p
    NP_116689.1
    • hypothetical protein; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; expressed at high levels during sporulation

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001138.5 Reference assembly

      Range
      222090..222959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179997.1 → NP_116689.1  TPA: Rrt5p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_116689.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A7A270, B3LUP1, B5VI57, C7GYD5, D6VTR3, P43607
      UniProtKB/TrEMBL
      G2WDH1, N1P3A2
      Conserved Domains (2) summary
      cd12409
      Location:20 → 106
      RRM1_RRT5; RNA recognition motif 1 (RRM1) found in yeast regulator of rDNA transcription protein 5 (RRT5) and similar proteins
      cd12410
      Location:132 → 226
      RRM2_RRT5; RNA recognition motif 2 (RRM2) found in yeast regulator of rDNA transcription protein 5 (RRT5) and similar proteins
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P43607.1

    Gene LinkOut

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