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    SRF5 STRUBBELIG-receptor family 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844238, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SRF5
    Official Full Name
    STRUBBELIG-receptor family 5
    Primary source
    TAIR:AT1G78980
    Locus tag
    AT1G78980
    See related
    Araport:AT1G78980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    STRUBBELIG-receptor family 5; YUP8H12R.40; YUP8H12R_40
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    Genomic context

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    See SRF5 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Sequence:
    Chromosome: 1; NC_003070.9 (29707625..29711421, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene camelliol C synthase 1 Neighboring gene lupeol synthase 2 Neighboring gene lupeol synthase 1 Neighboring gene HXXXD-type acyl-transferase family protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106547.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within phosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    STRUBBELIG-receptor family 5
    NP_178019.2
    • STRUBBELIG-receptor family 5 (SRF5); FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: STRUBBELIG-receptor family 4 (TAIR:AT3G13065.1); Has 170876 Blast hits to 124647 proteins in 4182 species: Archae - 145; Bacteria - 15263; Metazoa - 50770; Fungi - 9097; Plants - 76380; Viruses - 385; Other Eukaryotes - 18836 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29707625..29711421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106547.3 → NP_178019.2  STRUBBELIG-receptor family 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178019.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64550, Q6R2K1
      UniProtKB/TrEMBL
      A0A5S9WVQ3, A0A654ERV3, C0LGJ3
      Conserved Domains (4) summary
      PLN00113
      Location:73 → 680
      PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
      sd00033
      Location:70 → 93
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:25 → 65
      LRRNT_2; Leucine rich repeat N-terminal domain
      cl21453
      Location:410 → 675
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6R2K1.1

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