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    TPPB trehalose-6-phosphate phosphatase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844144, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TPPB
    Official Full Name
    trehalose-6-phosphate phosphatase
    Primary source
    TAIR:AT1G78090
    Locus tag
    AT1G78090
    See related
    Araport:AT1G78090
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    Arabidopsis thaliana trehalose-6-phosphate phosphatase B; ATTPPB; T11I11.2; T11I11_2; trehalose-6-phosphate phosphatase; TREHALOSE-6-PHOSPHATE PHOSPHATASE; trehalose-6-phosphate phosphatase B
    Summary
    homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases
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    Genomic context

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    See TPPB in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (29373803..29376639)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene F-box family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Trehalose-6-phosphate phosphatases from Arabidopsis thaliana: identification by functional complementation of the yeast tps2 mutant. Vogel G, et al. Plant J, 1998 Mar. PMID 9681009
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001334818.1
    NM_106458.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables trehalose-phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables trehalose-phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within trehalose biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in trehalose biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    trehalose-6-phosphate phosphatase
    NP_177932.1
    • trehalose-6-phosphate phosphatase (TPPB); CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G22210.1); Has 2381 Blast hits to 2375 proteins in 857 species: Archae - 41; Bacteria - 1374; Metazoa - 220; Fungi - 153; Plants - 455; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29373803..29376639
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106458.4 → NP_177932.1  trehalose-6-phosphate phosphatase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177932.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64897, Q9C9S4
      UniProtKB/TrEMBL
      A0A178W8D8, A0A5S9WVD3, A0A654EQ74
      Conserved Domains (1) summary
      cl21460
      Location:1 → 368
      HAD_like; Haloacid Dehalogenase-like Hydrolases

    2. NM_001334818.1 → NP_001322316.1  trehalose-6-phosphate phosphatase [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8D8, A0A1P8ATL8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9S4.1

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