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    KOM Rhomboid-related intramembrane serine protease family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844122, updated on 18-Sep-2024

    Summary

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    Official Symbol
    KOM
    Official Full Name
    Rhomboid-related intramembrane serine protease family protein
    Primary source
    TAIR:AT1G77860
    Locus tag
    AT1G77860
    See related
    Araport:AT1G77860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28K19.7; F28K19_7; KOMPEITO
    Summary
    mutant has Altered morphology of pollen exine wall; Seven-Path Transmembrane Protein
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    Genomic context

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    See KOM in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (29282162..29284480, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene auxin response factor 17 Neighboring gene BPS1-like protein Neighboring gene ncRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene membrane-anchored ubiquitin-fold protein 5 precursor Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. KOMPEITO, an Atypical Arabidopsis Rhomboid-Related Gene, Is Required for Callose Accumulation and Pollen Wall Development. Kanaoka MM, et al. Int J Mol Sci, 2022 May 25. PMID 35682638, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in pollen wall assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Rhomboid-related intramembrane serine protease family protein
    NP_177909.2
    • KOMPEITO (KOM); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like 1 (TAIR:AT2G29050.1); Has 4976 Blast hits to 4975 proteins in 1564 species: Archae - 94; Bacteria - 3058; Metazoa - 485; Fungi - 120; Plants - 306; Viruses - 0; Other Eukaryotes - 913 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29282162..29284480 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334801.1 → NP_001321009.1  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W8L8, A0A1P8APQ9, A0A384LQJ2, A0A654EPX7
      Conserved Domains (1) summary
      pfam01694
      Location:119 → 256
      Rhomboid; Rhomboid family

    2. NM_106435.2 → NP_177909.2  Rhomboid-related intramembrane serine protease family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177909.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F2Z6M1, F4I8K2, Q1PFC3, Q9SH15
      UniProtKB/TrEMBL
      A0A654EPX7
      Conserved Domains (1) summary
      pfam01694
      Location:119 → 256
      Rhomboid; Rhomboid family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I8K2.1

    Gene LinkOut

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