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    IDD14 indeterminate(ID)-domain 14 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843141, updated on 18-Sep-2024

    Summary

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    Official Symbol
    IDD14
    Official Full Name
    indeterminate(ID)-domain 14
    Primary source
    TAIR:AT1G68130
    Locus tag
    AT1G68130
    See related
    Araport:AT1G68130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtIDD14; IDD14alpha; IDD14beta; indeterminate(ID)-domain 14; T23K23.2; T23K23_2
    Summary
    Encodes the longer of two splice variants of a transcription factor involved in regulating starch metabolims in response to cold.
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    Genomic context

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    See IDD14 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (25532008..25534698)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ENTH/ANTH/VHS superfamily protein Neighboring gene BASIC PENTACYSTEINE protein Neighboring gene ncRNA Neighboring gene zinc finger/BTB domain protein, putative (DUF1644)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism. Seo PJ, et al. Nat Commun, 2011. PMID 21556057
    2. The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport. Cui D, et al. PLoS Genet, 2013. PMID 24039602, Free PMC Article
    3. Transcriptional and posttranscriptional regulation of transcription factor expression in Arabidopsis roots. Lee JY, et al. Proc Natl Acad Sci U S A, 2006 Apr 11. PMID 16581911, Free PMC Article
    4. A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. Smit ME, et al. Plant Cell, 2020 Feb. PMID 31806676, Free PMC Article
    5. Transcriptional regulation of nitrogen-associated metabolism and growth. Gaudinier A, et al. Nature, 2018 Nov. PMID 30356219

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. both gain- and loss-of-function mutants in IDD14 and its close homologs, IDD15 and IDD16, reveals that these three IDD transcription factors function redundantly and cooperatively in the regulation of multiple aspects of lateral organ morphogenesis
      Title: The arabidopsis IDD14, IDD15, and IDD16 cooperatively regulate lateral organ morphogenesis and gravitropism by promoting auxin biosynthesis and transport.
    2. an alternative spliced IDD14 isoform (IDD14beta) has a functional role in starch metabolism under cold conditions.
      Title: Two splice variants of the IDD14 transcription factor competitively form nonfunctional heterodimers which may regulate starch metabolism.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001084322.2
    NM_105483.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    NOT enables transcription cis-regulatory region binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within floral organ morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within gravitropism IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within leaf morphogenesis IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of auxin biosynthetic process IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of auxin polar transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of starch metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    indeterminate(ID)-domain 14
    NP_001077791.1
    • indeterminate(ID)-domain 14 (IDD14); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 16 (TAIR:AT1G25250.1); Has 5936 Blast hits to 4695 proteins in 166 species: Archae - 1; Bacteria - 0; Metazoa - 4962; Fungi - 104; Plants - 720; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).
    NP_176980.1
    • indeterminate(ID)-domain 14 (IDD14); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: indeterminate(ID)-domain 16 (TAIR:AT1G25250.1); Has 34626 Blast hits to 17187 proteins in 314 species: Archae - 1; Bacteria - 0; Metazoa - 32617; Fungi - 232; Plants - 764; Viruses - 1; Other Eukaryotes - 1011 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25532008..25534698
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105483.4 → NP_176980.1  indeterminate(ID)-domain 14 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176980.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MRJ3, Q9C9X7
      UniProtKB/TrEMBL
      A0A178WFX0, A0A5S9WT40, A0A654EXR8
      Conserved Domains (1) summary
      sd00017
      Location:150 → 169
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. NM_001084322.2 → NP_001077791.1  indeterminate(ID)-domain 14 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077791.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9C9X7
      Conserved Domains (2) summary
      PRK06669
      Location:209 → 281
      fliH; flagellar assembly protein H; Validated
      sd00017
      Location:64 → 83
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9C9X7.1

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