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    FAD-binding Berberine family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839296, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FAD-binding Berberine family protein
    Primary source
    TAIR:AT1G01980
    Locus tag
    AT1G01980
    See related
    Araport:AT1G01980
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22M8.11; F22M8_11; SEC1A; SIMILAR TO ELECTRON CAREER 1A
    Summary
    member of Reticuline oxidase-like family
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (340108..342040, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene armadillo repeat kinesin 2 Neighboring gene SEC7-like guanine nucleotide exchange family protein Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene UDP-D-glucuronate 4-epimerase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Four Arabidopsis berberine bridge enzyme-like proteins are specific oxidases that inactivate the elicitor-active oligogalacturonides. Benedetti M, et al. Plant J, 2018 Apr. PMID 29396998
    2. A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers. Irshad M, et al. BMC Plant Biol, 2008 Sep 16. PMID 18796151, Free PMC Article
    3. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article
    4. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100078.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables FAD binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 

    General protein information

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    Preferred Names
    FAD-binding Berberine family protein
    NP_171700.1
    • ATSEC1A; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G11770.1); Has 4204 Blast hits to 4007 proteins in 589 species: Archae - 34; Bacteria - 1730; Metazoa - 0; Fungi - 1606; Plants - 712; Viruses - 0; Other Eukaryotes - 122 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      340108..342040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100078.3 → NP_171700.1  FAD-binding Berberine family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171700.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q56ZK2, Q9LPC3
      UniProtKB/TrEMBL
      A0A178WKZ1, A0A5S9S5D3, A0A654E606
      Conserved Domains (3) summary
      pfam08031
      Location:475 → 532
      BBE; Berberine and berberine like
      cl19922
      Location:80 → 222
      FAD_binding_4; FAD binding domain
      cl40730
      Location:51 → 534
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LPC3.1

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