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    EXT3 extensin 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838728, updated on 18-Sep-2024

    Summary

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    Official Symbol
    EXT3
    Official Full Name
    extensin 3
    Primary source
    TAIR:AT1G21310
    Locus tag
    AT1G21310
    See related
    Araport:AT1G21310
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATEXT3; extensin 3; F16F4.4; F16F4_4; ROOT-SHOOT-HYPOCOTYL DEFECTIVE; RSH
    Summary
    Encodes extensin 3.
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    Genomic context

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    See EXT3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (7453245..7455009, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene nucleic acid/nucleotide binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The cell wall hydroxyproline-rich glycoprotein RSH is essential for normal embryo development in Arabidopsis. Hall Q, et al. Plant Cell, 2002 May. PMID 12034904, Free PMC Article
    2. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101983.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables structural constituent of cell wall IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in plant-type cell wall organization IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    extensin 3
    NP_173553.1
    • extensin 3 (EXT3); FUNCTIONS IN: structural constituent of cell wall; INVOLVED IN: plant-type cell wall organization; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Extensin-like repeat (InterPro:IPR006706); BEST Arabidopsis thaliana protein match is: extensin 4 (TAIR:AT1G76930.1); Has 148545 Blast hits to 27416 proteins in 1232 species: Archae - 272; Bacteria - 19294; Metazoa - 56539; Fungi - 24663; Plants - 25187; Viruses - 4465; Other Eukaryotes - 18125 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7453245..7455009 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101983.4 → NP_173553.1  extensin 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173553.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FS14, Q9FS16, Q9LMP2
      UniProtKB/TrEMBL
      A0A5S9VE03
      Conserved Domains (1) summary
      pfam04554
      Location:372 → 428
      Extensin_2; Extensin-like region
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FS16.3

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