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    SAC52 Ribosomal protein L16p/L10e family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837993, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SAC52
    Official Full Name
    Ribosomal protein L16p/L10e family protein
    Primary source
    TAIR:AT1G14320
    Locus tag
    AT1G14320
    See related
    Araport:AT1G14320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F14L17.9; F14L17_9; ribosomal protein L10; ribosomal protein L10 A; RPL10; RPL10A; SUPPRESSOR OF ACAULIS 52
    Summary
    Encodes a ribosomal protein L10 and may be involved in translation regulation. Semi-dominant mutations in SAC552 can suppress defects in acaulis5, which encodes a thermospermine synthase, by enhancing translation of acl5 and itself.
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    Genomic context

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    See SAC52 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (4888114..4889704)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ARM repeat superfamily protein Neighboring gene Haloacid dehalogenase-like hydrolase (HAD) superfamily protein Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene RNA-binding (RRM/RBD/RNP motifs) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana. Imai A, et al. Plant J, 2008 Dec. PMID 18694459
    2. NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism. Zorzatto C, et al. Nature, 2015 Apr 30. PMID 25707794, Free PMC Article
    3. New evidence for differential roles of l10 ribosomal proteins from Arabidopsis. Falcone Ferreyra ML, et al. Plant Physiol, 2013 Sep. PMID 23886624, Free PMC Article
    4. Plant L10 ribosomal proteins have different roles during development and translation under ultraviolet-B stress. Falcone Ferreyra ML, et al. Plant Physiol, 2010 Aug. PMID 20516338, Free PMC Article
    5. Regulated nuclear trafficking of rpL10A mediated by NIK1 represents a defense strategy of plant cells against virus. Carvalho CM, et al. PLoS Pathog, 2008 Dec. PMID 19112492, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. SAC52 encodes ribosomal protein L10, a suppressor mutant of acl5-1. Transformation of acl5-1 mutants with a genomic fragment containing the sac52-d allele rescued the dwarf phenotype.
      Title: A semi-dominant mutation in the ribosomal protein L10 gene suppresses the dwarf phenotype of the acl5 mutant in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001332111.1
    NM_101298.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to UV-B IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within developmental process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within translation TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in Golgi apparatus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    part_of cytosolic large ribosomal subunit HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in nucleolus HDA PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plant-type vacuole HDA PubMed 
    located_in ribosome IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Ribosomal protein L16p/L10e family protein
    NP_001319000.1
    • SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: cellular response to UV-B, translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1844 Blast hits to 1606 proteins in 584 species: Archae - 300; Bacteria - 0; Metazoa - 671; Fungi - 224; Plants - 162; Viruses - 0; Other Eukaryotes - 487 (source: NCBI BLink).
    NP_563945.2
    • SUPPRESSOR OF ACAULIS 52 (SAC52); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: cellular response to UV-B, translation; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L10e (InterPro:IPR001197), Ribosomal protein L10e/L16 (InterPro:IPR016180), Ribosomal protein L10e, conserved site (InterPro:IPR018255); BEST Arabidopsis thaliana protein match is: Ribosomal protein L16p/L10e family protein (TAIR:AT1G26910.1); Has 1679 Blast hits to 1677 proteins in 606 species: Archae - 325; Bacteria - 13; Metazoa - 562; Fungi - 162; Plants - 159; Viruses - 0; Other Eukaryotes - 458 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      4888114..4889704
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101298.3 → NP_563945.2  Ribosomal protein L16p/L10e family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563945.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4HUJ2, Q93VL0, Q93VT9
      UniProtKB/TrEMBL
      A0A178WF16, A0A5S9UD55, C0Z3F6
      Conserved Domains (1) summary
      PTZ00173
      Location:1 → 211
      PTZ00173; 60S ribosomal protein L10; Provisional

    2. NM_001332111.1 → NP_001319000.1  Ribosomal protein L16p/L10e family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A2H1ZEB8
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93VT9.1

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