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    ckl12 casein kinase I-like 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835804, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ckl12
    Official Full Name
    casein kinase I-like 12
    Primary source
    TAIR:AT5G57015
    Locus tag
    AT5G57015
    See related
    Araport:AT5G57015
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    casein kinase I-like 12
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    Genomic context

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    See ckl12 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Sequence:
    Chromosome: 5; NC_003076.8 (23071028..23074843)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase Neighboring gene calmodulin-binding family protein Neighboring gene myristoyl-CoA:protein N-myristoyltransferase Neighboring gene Lycopene beta/epsilon cyclase protein Neighboring gene U-box domain-containing protein kinase family protein Neighboring gene Lactoylglutathione lyase / glyoxalase I family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plasmodesmal-associated protein kinase in tobacco and Arabidopsis recognizes a subset of non-cell-autonomous proteins. Lee JY, et al. Plant Cell, 2005 Oct. PMID 16126836, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_148142.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    casein kinase I-like 12
    NP_680447.1
    • casein kinase I-like 12 (ckl12); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: casein kinase 1 (TAIR:AT4G26100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23071028..23074843
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_148142.3 → NP_680447.1  casein kinase I-like 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_680447.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8VYK9
      UniProtKB/TrEMBL
      A0A178UEU7, A0A5S9YEW6, A0A654GC61
      Conserved Domains (1) summary
      cd14125
      Location:8 → 282
      STKc_CK1_delta_epsilon; Catalytic domain of the Serine/Threonine protein kinases, Casein Kinase 1 delta and epsilon
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYK9.1

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