U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    RPN12b regulatory particle non-ATPase 12B [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 834209, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RPN12b
    Official Full Name
    regulatory particle non-ATPase 12B
    Primary source
    TAIR:AT5G42040
    Locus tag
    AT5G42040
    See related
    Araport:AT5G42040
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJC20.14; MJC20_14; regulatory particle non-ATPase 12B
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RPN12b in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (16813565..16814749, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Heat shock protein 70 (Hsp 70) family protein Neighboring gene ABL interactor-like protein 4 Neighboring gene DCD (Development and Cell Death) domain protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plastid HDA PubMed 
    part_of proteasome regulatory particle IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    regulatory particle non-ATPase 12B
    NP_199019.2
    • regulatory particle non-ATPase 12B (RPN12b); FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: proteasome regulatory particle; CONTAINS InterPro DOMAIN/s: COP9 signalosome, subunit CSN8 (InterPro:IPR019280), 26S proteasome non-ATPase regulatory subunit Rpn12 (InterPro:IPR006746); BEST Arabidopsis thaliana protein match is: regulatory particle non-ATPase 12A (TAIR:AT1G64520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      16813565..16814749 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123569.3 → NP_199019.2  regulatory particle non-ATPase 12B [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199019.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FHY0
      Conserved Domains (1) summary
      pfam10075
      Location:73 → 187
      CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FHY0.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools