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    CIL CCT motif family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 828705, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CIL
    Official Full Name
    CCT motif family protein
    Primary source
    TAIR:AT4G25990
    Locus tag
    AT4G25990
    See related
    Araport:AT4G25990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F20B18.100; F20B18_100
    Summary
    chloroplast import apparatus CIA2-like. CIA2 is a transcription factor which upregulates chloroplast translocon genes
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    Genomic context

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    See CIL in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Sequence:
    Chromosome: 4; NC_003075.7 (13191085..13194124, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene P-glycoprotein 2 Neighboring gene phosphatidylserine decarboxylase 3 Neighboring gene peroxidase superfamily protein Neighboring gene RNA-binding KH domain-containing protein Neighboring gene Peroxidase superfamily protein Neighboring gene 4/1 protein short form protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana. Gawroński P, et al. Plant J, 2021 Feb. PMID 33119927
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana.
      Title: CIA2 and CIA2-LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_001341771.1
    NM_118732.2
    NM_179114.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CCT motif family protein
    NP_567737.1
    • CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: chloroplast import apparatus 2 (TAIR:AT5G57180.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849445.1
    • CIL; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, LP.02 two leaves visible, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: chloroplast import apparatus 2 (TAIR:AT5G57180.2); Has 1342 Blast hits to 1342 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1336; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      13191085..13194124 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_118732.2 → NP_567737.1  CCT motif family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567737.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWA9, A0A654FT00, Q94KJ2
      Conserved Domains (1) summary
      pfam06203
      Location:341 → 384
      CCT; CCT motif

    2. NM_001341771.1 → NP_001328403.1  CCT motif family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWA9, Q9SZH3
      Conserved Domains (1) summary
      pfam06203
      Location:341 → 377
      CCT; CCT motif

    3. NM_179114.2 → NP_849445.1  CCT motif family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849445.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XWA9, C0SVJ8
      Conserved Domains (1) summary
      pfam06203
      Location:341 → 399
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version

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