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    MEE55 Serinc-domain containing serine and sphingolipid biosynthesis protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826965, updated on 18-Sep-2024

    Summary

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    Official Symbol
    MEE55
    Official Full Name
    Serinc-domain containing serine and sphingolipid biosynthesis protein
    Primary source
    TAIR:AT4G13345
    Locus tag
    AT4G13345
    See related
    Araport:AT4G13345
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    maternal effect embryo arrest 55
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    Genomic context

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    See MEE55 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Sequence:
    Chromosome: 4; NC_003075.7 (7765060..7769763)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene uncharacterized protein Neighboring gene Leucine-rich repeat (LRR) family protein Neighboring gene NSP (nuclear shuttle protein)-interacting GTPase Neighboring gene ATP-dependent caseinolytic (Clp) protease/crotonase family protein Neighboring gene serine/arginine repetitive matrix protein, putative (DUF936) Neighboring gene Heavy metal transport/detoxification superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and molecular identification of genes required for female gametophyte development and function in Arabidopsis. Pagnussat GC, et al. Development, 2005 Feb. PMID 15634699
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001340853.1
    NM_001340854.1
    NM_001340855.1
    NM_001340856.1
    NM_117408.4
    NM_179042.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within embryo development ending in seed dormancy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Serinc-domain containing serine and sphingolipid biosynthesis protein
    NP_567403.1
    • maternal effect embryo arrest 55 (MEE55); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_849373.1
    • maternal effect embryo arrest 55 (MEE55); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: membrane; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: TMS membrane protein/tumour differentially expressed protein (InterPro:IPR005016); BEST Arabidopsis thaliana protein match is: Serinc-domain containing serine and sphingolipid biosynthesis protein (TAIR:AT3G24460.1); Has 836 Blast hits to 765 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 450; Fungi - 174; Plants - 143; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      7765060..7769763
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340852.1 → NP_001328594.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B546

    2. NM_117408.4 → NP_567403.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567403.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F3I4, Q93YS8
      Conserved Domains (1) summary
      pfam03348
      Location:66 → 392
      Serinc; Serine incorporator (Serinc)

    3. NM_001340853.1 → NP_001328593.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B544, A0A5S9XS57, A0A7G2F3I4

    4. NM_001340854.1 → NP_001328592.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B559, A0A5S9XS57

    5. NM_179042.1 → NP_849373.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849373.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F3I4, F4JT04
      Conserved Domains (1) summary
      pfam03348
      Location:66 → 392
      Serinc; Serine incorporator (Serinc)

    6. NM_001340855.1 → NP_001328591.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2F3I4, F4JT04

    7. NM_001340856.1 → NP_001328590.1  Serinc-domain containing serine and sphingolipid biosynthesis protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B546
    Nucleotide Protein
    Heading Accession and Version

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