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    BPM6 BTB-POZ and MATH domain 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 823478, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BPM6
    Official Full Name
    BTB-POZ and MATH domain 6
    Primary source
    TAIR:AT3G43700
    Locus tag
    AT3G43700
    See related
    Araport:AT3G43700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATBPM6; BTB-POZ and MATH domain 6; BTB-POZ AND MATH DOMAIN 6
    Summary
    Encodes a member of the MATH-BTB domain proteins (BPMs) that directly interact with and target for proteasomal degradation the class I homeobox-leucine zipper (HD-ZIP) transcription factor ATHB6. Known members include AT5G19000 (BPM1), AT3G06190 (BPM2), AT2G39760 (BPM3), AT3G03740 (BPM4), AT5G21010 (BPM5) and AT3G43700 (BPM6).
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    Genomic context

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    See BPM6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (15601754..15603898)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene pseudo Neighboring gene miscRNA Neighboring gene Galactose oxidase/kelch repeat superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Arabidopsis MYB56 as a novel substrate for CRL3BPM E3 ligases. Chen L, et al. Mol Plant, 2014 Oct 24. PMID 25343985
    2. MATH/BTB CRL3 receptors target the homeodomain-leucine zipper ATHB6 to modulate abscisic acid signaling. Lechner E, et al. Dev Cell, 2011 Dec 13. PMID 22172674
    3. Arabidopsis AtCUL3a and AtCUL3b form complexes with members of the BTB/POZ-MATH protein family. Weber H, et al. Plant Physiol, 2005 Jan. PMID 15618422, Free PMC Article
    4. Identification of Arabidopsis MYB56 as a novel substrate for CRL3(BPM) E3 ligases. Chen L, et al. Mol Plant, 2015 Feb. PMID 25618823
    5. Arabidopsis thaliana BTB/ POZ-MATH proteins interact with members of the ERF/AP2 transcription factor family. Weber H, et al. FEBS J, 2009 Nov. PMID 19843165

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001339104.1
    NM_114238.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to salt stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to osmotic stress IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    BTB-POZ and MATH domain 6
    NP_189956.2
    • BTB-POZ and MATH domain 6 (BPM6); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 7239 Blast hits to 7013 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 5298; Fungi - 161; Plants - 1386; Viruses - 66; Other Eukaryotes - 328 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      15601754..15603898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001339103.1 → NP_001327387.1  BTB-POZ and MATH domain 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LS59, A0A5S9XI05, A0A7G2ERB6
      Conserved Domains (3) summary
      cd00121
      Location:36 → 169
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd18280
      Location:191 → 316
      BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family
      cl28903
      Location:316 → 356
      BACK; BACK (BTB and C-terminal Kelch) domain

    2. NM_114238.3 → NP_189956.2  BTB-POZ and MATH domain 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189956.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A1L4W5, Q9M2B6
      UniProtKB/TrEMBL
      A0A178VLP8, A0A5S9XI05
      Conserved Domains (3) summary
      cd00121
      Location:36 → 169
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cd18280
      Location:191 → 316
      BTB_POZ_BPM_plant; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in plant BTB/POZ-MATH (BPM) protein family
      cd14736
      Location:316 → 377
      BACK_AtBPM-like; BACK (BTB and C-terminal Kelch) domain found in plant BTB/POZ-MATH (BPM) protein family

    3. NM_001339104.1 → NP_001327388.1  BTB-POZ and MATH domain 6 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LS60, A0A5S9XI05, A0A7G2ERB6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A1L4W5.1

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