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    BSH transcription regulatory protein SNF5, putative (BSH) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821025, updated on 18-Sep-2024

    Summary

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    Official Symbol
    BSH
    Official Full Name
    transcription regulatory protein SNF5, putative (BSH)
    Primary source
    TAIR:AT3G17590
    Locus tag
    AT3G17590
    See related
    Araport:AT3G17590
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    BUSHY; BUSHY GROWTH; CHE1
    Summary
    Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes.
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    Genomic context

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    See BSH in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Sequence:
    Chromosome: 3; NC_003074.8 (6017166..6019724, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SsrA-binding protein Neighboring gene indole-3-acetic acid inducible 31 Neighboring gene HY5-homolog

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and analysis of the Arabidopsis thaliana BSH gene, a member of the SNF5 gene family. Brzeski J, et al. Nucleic Acids Res, 1999 Jun 1. PMID 10325430, Free PMC Article
    2. AtSWI3B, an Arabidopsis homolog of SWI3, a core subunit of yeast Swi/Snf chromatin remodeling complex, interacts with FCA, a regulator of flowering time. Sarnowski TJ, et al. Nucleic Acids Res, 2002 Aug 1. PMID 12140326, Free PMC Article
    3. SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development. Sarnowski TJ, et al. Plant Cell, 2005 Sep. PMID 16055636, Free PMC Article
    4. AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex. Bieluszewski T, et al. BMC Plant Biol, 2015 Mar 5. PMID 25849764, Free PMC Article
    5. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001202989.1
    NM_112639.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables chromatin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within chromatin remodeling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear chromosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    transcription regulatory protein SNF5, putative (BSH)
    NP_001189918.1
    • BUSHY GROWTH (BSH); CONTAINS InterPro DOMAIN/s: SNF5/SMARCB1/INI1 (InterPro:IPR006939).
    NP_566581.1
    • BUSHY GROWTH (BSH); CONTAINS InterPro DOMAIN/s: SNF5/SMARCB1/INI1 (InterPro:IPR006939); Has 591 Blast hits to 429 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 266; Fungi - 262; Plants - 37; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      6017166..6019724 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338294.1 → NP_001326663.1  transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9V6, A0A1I9LPZ2

    2. NM_112639.4 → NP_566581.1  transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566581.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P93045, Q9LUN8
      UniProtKB/TrEMBL
      A0A178V9V6, Q2HIG1
      Conserved Domains (1) summary
      pfam04855
      Location:21 → 157
      SNF5; SNF5 / SMARCB1 / INI1

    3. NM_001202989.1 → NP_001189918.1  transcription regulatory protein SNF5, putative (BSH) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189918.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V9V6, A0A5S9XD22, F4J581
      Conserved Domains (1) summary
      pfam04855
      Location:23 → 159
      SNF5; SNF5 / SMARCB1 / INI1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P93045.2

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