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    RSH2 RELA/SPOT homolog 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820619, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RSH2
    Official Full Name
    RELA/SPOT homolog 2
    Primary source
    TAIR:AT3G14050
    Locus tag
    AT3G14050
    See related
    Araport:AT3G14050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT-RSH2; ATRSH2; RELA-SPOT HOMOLOG 2; RELA/SPOT homolog 2; RELA/SPOT HOMOLOG 2
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    Genomic context

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    See RSH2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (4650714..4654046, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Pectin lyase-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene Subtilase family protein Neighboring gene cation exchanger 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana. Mizusawa K, et al. Planta, 2008 Sep. PMID 18535838
    2. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain. Zhao J, et al. Proc Natl Acad Sci U S A, 2013 Nov 26. PMID 24218605, Free PMC Article
    3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    4. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112259.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP diphosphokinase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTP diphosphokinase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in guanosine tetraphosphate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within response to abscisic acid IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to wounding IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    RELA/SPOT homolog 2
    NP_188021.1
    • RELA/SPOT homolog 2 (RSH2); CONTAINS InterPro DOMAIN/s: Metal-dependent phosphohydrolase, HD subdomain (InterPro:IPR006674), Metal-dependent phosphohydrolase, HD domain (InterPro:IPR003607), RelA/SpoT (InterPro:IPR007685); BEST Arabidopsis thaliana protein match is: RELA/SPOT homolog 3 (TAIR:AT1G54130.1); Has 12447 Blast hits to 12322 proteins in 2456 species: Archae - 4; Bacteria - 8610; Metazoa - 164; Fungi - 55; Plants - 218; Viruses - 2; Other Eukaryotes - 3394 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4650714..4654046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112259.5 → NP_188021.1  RELA/SPOT homolog 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188021.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LVJ3
      UniProtKB/TrEMBL
      A0A5S9XBZ0, A0A654F8N2
      Conserved Domains (3) summary
      COG0317
      Location:190 → 550
      SpoT; (p)ppGpp synthase/hydrolase, HD superfamily [Signal transduction mechanisms, Transcription]
      pfam04607
      Location:427 → 537
      RelA_SpoT; Region found in RelA / SpoT proteins
      pfam13328
      Location:214 → 368
      HD_4; HD domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LVJ3.1

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