U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    TLP9 tubby-like protein 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819812, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    TLP9
    Official Full Name
    tubby-like protein 9
    Primary source
    TAIR:AT3G06380
    Locus tag
    AT3G06380
    See related
    Araport:AT3G06380
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATTLP9; F24P17.15; F24P17_15; tubby-like protein 9
    Summary
    Member of TLP family
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See TLP9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (1936050..1938257)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene arabinogalactan protein 27 Neighboring gene sodium hydrogen exchanger 4 Neighboring gene Uncharacterized protein family (UPF0497) Neighboring gene chromatin-remodeling protein 11

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Molecular analyses of the Arabidopsis TUBBY-like protein gene family. Lai CP, et al. Plant Physiol, 2004 Apr. PMID 15064372, Free PMC Article
    2. Upregulation of an Arabidopsis RING-H2 gene, XERICO, confers drought tolerance through increased abscisic acid biosynthesis. Ko JH, et al. Plant J, 2006 Aug. PMID 16792696
    3. The subcellular localization of Tubby-like proteins and participation in stress signaling and root colonization by the mutualist Piriformospora indica. Reitz MU, et al. Plant Physiol, 2012 Sep. PMID 22751378, Free PMC Article
    4. Characterization of Arabidopsis Tubby-like proteins and redundant function of AtTLP3 and AtTLP9 in plant response to ABA and osmotic stress. Bao Y, et al. Plant Mol Biol, 2014 Nov. PMID 25168737
    5. Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. de Lucas M, et al. Plant Cell, 2016 Oct. PMID 27650334, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that Tubby-like proteins AtTLP3 and AtTLP9 are involved in abscisic acid (ABA) signaling pathway during seed germination and early seedling growth.
      Title: Characterization of Arabidopsis Tubby-like proteins and redundant function of AtTLP3 and AtTLP9 in plant response to ABA and osmotic stress.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_111513.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within response to fungus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    tubby-like protein 9
    NP_187289.1
    • tubby-like protein 9 (TLP9); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 11 (TAIR:AT5G18680.1); Has 949 Blast hits to 946 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 350; Fungi - 19; Plants - 465; Viruses - 0; Other Eukaryotes - 115 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1936050..1938257
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001337653.1 → NP_001326702.1  tubby-like protein 9 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LQ32
      Conserved Domains (1) summary
      pfam01167
      Location:5 → 283
      Tub; Tub family

    2. NM_111513.4 → NP_187289.1  tubby-like protein 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187289.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SQU1
      UniProtKB/TrEMBL
      A0A178VF20, A0A5S9X9N4
      Conserved Domains (2) summary
      pfam00646
      Location:31 → 77
      F-box; F-box domain
      pfam01167
      Location:97 → 375
      Tub; Tub family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SQU1.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools