ALY2 ALWAYS EARLY 2 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: ALY2
Official Full Name: ALWAYS EARLY 2
Primary source: TAIR:AT3G05380
Locus tag: AT3G05380
See related: Araport:AT3G05380
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: ALWAYS EARLY 2; ARABIDOPSIS THALIANA ALWAYS EARLY 2; ATALY2; F22F7.18; F22F7_18
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Genomic context

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See ALY2 in Genome Data Viewer

Location:: chromosome: 3

Exon count:: 21

Sequence:: Chromosome: 3; NC_003074.8 (1539527..1546469)

Chromosome 3 - NC_003074.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003074.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

ALY2 plays a role in mRNA export and that the efficient nucleocytosolic transport of mRNAs is a requirement for proper plant growth and development.
Title: ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.

Submit: New GeneRIF Correction

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001035566.2

Supported by ESTs:

NM_001125108.2

Supported by ESTs:

NM_001202883.1

Supported by ESTs:

NM_111411.5

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA-templated transcription	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of DRM complex	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: ALWAYS EARLY 2

NP_001030643.1

ALWAYS EARLY 2 (ALY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_001118580.1

ALWAYS EARLY 2 (ALY2); CONTAINS InterPro DOMAIN/s: DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NP_001189812.1

ALWAYS EARLY 2 (ALY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1).

NP_001189813.1

ALWAYS EARLY 2 (ALY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1).

NP_187189.2

ALWAYS EARLY 2 (ALY2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity, nucleic acid binding; CONTAINS InterPro DOMAIN/s: Tudor domain (InterPro:IPR002999), DIRP (InterPro:IPR010561); BEST Arabidopsis thaliana protein match is: DIRP; Myb-like DNA-binding domain (TAIR:AT5G27610.1); Has 3515 Blast hits to 2611 proteins in 325 species: Archae - 0; Bacteria - 509; Metazoa - 1706; Fungi - 322; Plants - 232; Viruses - 9; Other Eukaryotes - 737 (source: NCBI BLink).