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    rh50 Rh50-like protein [ Danio rerio (zebrafish) ]

    Gene ID: 791729, updated on 12-Sep-2024

    Summary

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    Official Symbol
    rh50provided by ZNC
    Official Full Name
    Rh50-like proteinprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-000427-1
    See related
    Ensembl:ENSDARG00000041848 AllianceGenome:ZFIN:ZDB-GENE-000427-1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Rhp2
    Summary
    Predicted to enable ammonium transmembrane transporter activity. Predicted to be involved in ammonium transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See rh50 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (37259395..37263524, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (37226961..37231090, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA U13 Neighboring gene RNA binding motif protein 39b Neighboring gene solute carrier family 12 member 5b Neighboring gene uncharacterized LOC103911542 Neighboring gene eukaryotic translation initiation factor 2D

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of human RhCG and mouse Rhcg as novel nonerythroid Rh glycoprotein homologues predominantly expressed in kidney and testis. Liu Z, et al. J Biol Chem, 2000 Aug 18. PMID 10852913
    2. Evolutionary conservation and diversification of Rh family genes and proteins. Huang CH, et al. Proc Natl Acad Sci U S A, 2005 Oct 25. PMID 16227429, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables ammonium channel activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ammonium channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in ammonium homeostasis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in ammonium transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within ammonium transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Rh50-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126444.1 → NP_001119916.1  Rh50-like protein isoform 2

      Status: PROVISIONAL

      Source sequence(s)
      CR751226
      UniProtKB/TrEMBL
      A0A8N7UYZ2, B0UYU0
      Related
      ENSDARP00000061326.4, ENSDART00000061327.5
      Conserved Domains (1) summary
      cl03012
      Location:39 → 448
      Ammonium_transp; Ammonium Transporter Family

    2. NM_131547.1 → NP_571622.1  Rh50-like protein isoform 1

      See identical proteins and their annotated locations for NP_571622.1

      Status: PROVISIONAL

      Source sequence(s)
      AF209468
      UniProtKB/TrEMBL
      Q9IAC8
      Conserved Domains (1) summary
      cl03012
      Location:39 → 448
      Ammonium_transp; Ammonium Transporter Family

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      37259395..37263524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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