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    nsg1 neuronal vesicle trafficking associated 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 780310, updated on 18-Sep-2024

    Summary

    Official Symbol
    nsg1provided by Xenbase
    Official Full Name
    neuronal vesicle trafficking associated 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-992527
    See related
    Ensembl:ENSXETG00000038539
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    p21; neep21; d4s234e
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See nsg1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (26274999..26300868, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (18624127..18649968)

    Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene msh homeobox 1 Neighboring gene syntaxin 18 Neighboring gene uncharacterized LOC101734699 Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene Ly1 antibody reactive

    Genomic regions, transcripts, and products

    General gene information

    Clone Names

    • MGC145190

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables clathrin light chain binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within clathrin coat assembly IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in Golgi cisterna membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in multivesicular body membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    neuronal vesicle trafficking-associated protein 1
    Names
    neuron specific gene family member 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079381.1NP_001072849.1  neuronal vesicle trafficking-associated protein 1

      See identical proteins and their annotated locations for NP_001072849.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122904
      UniProtKB/TrEMBL
      Q05B35
      Conserved Domains (1) summary
      pfam06387
      Location:1180
      Calcyon; D1 dopamine receptor-interacting protein (calcyon)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      26274999..26300868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012966091.2XP_012821545.1  neuronal vesicle trafficking-associated protein 1 isoform X1

      See identical proteins and their annotated locations for XP_012821545.1

      UniProtKB/TrEMBL
      Q05B35
      Related
      ENSXETP00000071819.1, ENSXETT00000078553.2
      Conserved Domains (1) summary
      pfam06387
      Location:1180
      Calcyon; D1 dopamine receptor-interacting protein (calcyon)