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    ttc9b tetratricopeptide repeat domain 9B [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 779712, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ttc9bprovided by Xenbase
    Official Full Name
    tetratricopeptide repeat domain 9Bprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-489383
    See related
    Ensembl:ENSXETG00000037469
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
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    Genomic context

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    See ttc9b in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (77659728..77672570, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 8 NC_030684.1 (56457149..56469953, complement)

    Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene signal induced proliferation associated 1 like 3 Neighboring gene mitogen-activated protein kinase kinase kinase 10 Neighboring gene uncharacterized LOC116406758 Neighboring gene cyclin P Neighboring gene v-akt murine thymoma viral oncogene homolog 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC145232

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 9B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001078791.2 → NP_001072259.2  tetratricopeptide repeat protein 9B

      Status: VALIDATED

      Source sequence(s)
      BC121245, CF152224
      UniProtKB/TrEMBL
      A0A6I8SB71, A0A8J0PL78
      Related
      ENSXETP00000089823.1, ENSXETT00000101279.2
      Conserved Domains (2) summary
      TIGR02917
      Location:132 → 197
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:52 → 109
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      77659728..77672570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials