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    bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 779698, updated on 17-Aug-2024

    Summary

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    Official Symbol
    bloc1s1provided by Xenbase
    Official Full Name
    biogenesis of lysosomal organelles complex 1 subunit 1provided by Xenbase
    Primary source
    Xenbase:XB-GENE-952074
    See related
    Ensembl:ENSXETG00000017483
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    blos1; gcn5l1
    Orthologs
    human mouse all
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    Genomic context

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    See bloc1s1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 2 NC_030678.2 (137084720..137099366)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 2 NC_030678.1 (133812252..133827345)

    Chromosome 2 - NC_030678.2Genomic Context describing neighboring genes Neighboring gene protein S100-B Neighboring gene integrin subunit alpha 7 Neighboring gene retinol dehydrogenase 5 Neighboring gene CD63 molecule

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome of the Western clawed frog Xenopus tropicalis. Hellsten U, et al. Science, 2010 Apr 30. PMID 20431018, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Clone Names

    • MGC146908

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within aerobic respiration ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within anterograde axonal transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within anterograde synaptic vesicle transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in endosomal transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within lysosome localization ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within neuron projection development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within peptidyl-lysine acetylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of BLOC-1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of BLOC-1 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of BORC complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial intermembrane space IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial intermembrane space ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrial matrix ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    biogenesis of lysosome-related organelles complex 1 subunit 1
    Names
    BLOC-1 subunit 1
    biogenesis of lysosome-related organelles complex-1, subunit 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017271.2 → NP_001017271.1  biogenesis of lysosome-related organelles complex 1 subunit 1 isoform 2

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (2) uses an alternate splice site at the 3' end, compared to variant 1. This difference results in a shorter protein (isoform 2) with a distinct 3' coding region, compared to isoform 1.
      Source sequence(s)
      CR855794
      UniProtKB/TrEMBL
      A0A8J0PJB9
      Conserved Domains (1) summary
      pfam06320
      Location:5 → 89
      GCN5L1; GCN5-like protein 1 (GCN5L1)

    2. NM_001078781.1 → NP_001072249.1  biogenesis of lysosome-related organelles complex 1 subunit 1 isoform 1

      See identical proteins and their annotated locations for NP_001072249.1

      Status: PROVISIONAL

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      BC118866
      UniProtKB/Swiss-Prot
      Q0VFD8
      Related
      ENSXETP00000037986.2, ENSXETT00000037986.4
      Conserved Domains (1) summary
      pfam06320
      Location:5 → 117
      GCN5L1; GCN5-like protein 1 (GCN5L1)

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030678.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      137084720..137099366
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0VFD8.1 GenPept UniProtKB/Swiss-Prot:Q0VFD8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.